Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_K01
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 45 9e-05
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 36 0.043
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 30 2.1
11_06_0693 - 26334574-26336121 30 2.1
02_05_0549 + 29900714-29900953,29902224-29902323,29902578-299027... 30 2.1
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 29 3.7
04_03_0863 + 20397161-20397239,20397464-20397672,20397768-203978... 29 3.7
09_02_0625 + 11334418-11334499,11335067-11335164,11335758-113358... 29 6.5
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611... 28 8.6
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 44.8 bits (101), Expect = 9e-05
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = +3
Query: 408 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 584
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI +
Sbjct: 105 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 163
Query: 585 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAK 692
I + + + +E++ TGI +D++ A+
Sbjct: 164 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIAR 199
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 35.9 bits (79), Expect = 0.043
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Frame = +3
Query: 408 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 584
GE V + +GT G+ + +G ++ PV + LGR+ N G+PID PI +
Sbjct: 65 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEA 123
Query: 585 TAAI------HAEAPEFVDMSVQ---QEILVTGIKVVDLLAPYAK 692
I A A ++ S + +E++ TGI +D++ A+
Sbjct: 124 YLDISDFDIGFAGAGSSINPSERTYPEEMIQTGISTIDVMNSIAR 168
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 550 GSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMV 425
GSP+ R + AP G+ G+P++ ++PS+P +++
Sbjct: 452 GSPVYAQSRSPIRAPLGVSFGDPKAQ----NSRPSIPHPSLI 489
>11_06_0693 - 26334574-26336121
Length = 515
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -1
Query: 690 WHKERADRRLLYQLRESPAAQTCRQTLEL 604
WH A+RRLL+ L SP A+ R+ LEL
Sbjct: 20 WHPRTAERRLLHLLHHSPPAR--RRPLEL 46
>02_05_0549 +
29900714-29900953,29902224-29902323,29902578-29902719,
29902720-29902826,29903179-29903480
Length = 296
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 522 RGFQLPPGYEWVSQSRVQVAHGLSLQYRPWQWSELCSHPNVGLP 391
RG++L Y+WV R QV + Q + ++ + PNVG P
Sbjct: 174 RGWRLSQSYQWVKDRRPQVQLTDASQNQLVEYEQKLFGPNVGAP 217
>05_02_0100 +
6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 429 IAMDGTEGLVRGQPVLDSGSPIRIPVGAE-TLGRIINVIGEPIDERGPI 572
I D E + P S S +P AE L I NV+GE +D+ GP+
Sbjct: 128 IVPDSEEESLPSSPETSSTSNYDMPDLAEQNLEHIYNVLGEMVDKEGPV 176
>04_03_0863 +
20397161-20397239,20397464-20397672,20397768-20397874,
20397996-20398098,20398236-20398412,20398549-20398704
Length = 276
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 322 ELHIYHSTDNGNNLTLAFSCRF 257
ELH+ H+ +NGN LAF RF
Sbjct: 136 ELHMVHTNENGNITVLAFLYRF 157
>09_02_0625 + 11334418-11334499,11335067-11335164,11335758-11335831,
11335996-11336598,11336692-11337185,11338035-11338170,
11338417-11338488,11338581-11338652,11339078-11339226,
11340129-11340364,11340567-11340693,11341011-11341079,
11341172-11341361,11341465-11341857,11342084-11342195
Length = 968
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +3
Query: 204 NVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSVLW*MC 317
N E S+ SMP L NL+E AK LLP L+ +C
Sbjct: 920 NAELSINSMPTAS---LSNLEEYAKKSLLPAVALFALC 954
>03_02_0961 + 12759701-12760054,12760294-12760420,12760719-12761167,
12761369-12761590,12761672-12761980,12762092-12762430,
12762504-12762584,12762661-12762756,12762846-12763220,
12763400-12763531,12763962-12764132
Length = 884
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = -3
Query: 571 MGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWAT 392
+GP + + + RP + G+ + + P KP P + R V +PK T
Sbjct: 811 IGPDFNPAISVAALNRPAIVKKPGVVIKPIQYEEVDPHEKPDEPKRVIQRAVPNPKAKRT 870
Query: 391 SSXEA 377
S+ +A
Sbjct: 871 SAKQA 875
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,666,950
Number of Sequences: 37544
Number of extensions: 540470
Number of successful extensions: 1411
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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