Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_K01
(879 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 202 3e-52
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 66 4e-11
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 66 4e-11
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 47 2e-05
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 46 5e-05
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 46 5e-05
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 32 0.62
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 31 1.4
U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam ... 29 3.3
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 29 5.8
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 5.8
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 202 bits (493), Expect = 3e-52
Identities = 101/136 (74%), Positives = 109/136 (80%)
Frame = +3
Query: 375 PASXLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 554
P LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G PI+IPVG ETLGRI+NVIGEPI
Sbjct: 102 PRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKIPVGPETLGRIMNVIGEPI 161
Query: 555 DERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKXXXXXXXXXXXXXX 734
DERGPI + AAIHAEAPEFV+MSV+QEILVTGIKVVDLLAPYAK
Sbjct: 162 DERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK 221
Query: 735 TVLIMELIXNVAKAHG 782
TVLIMELI NVAKAHG
Sbjct: 222 TVLIMELINNVAKAHG 237
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +2
Query: 311 DVQFEDNLPPILNALEVQNRSPRL 382
DVQF++NLPPILN LEV RSPRL
Sbjct: 81 DVQFDENLPPILNGLEVVGRSPRL 104
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +2
Query: 794 VFAGVGERTREGNDLYHE 847
VFAGVGERTREGNDLYHE
Sbjct: 241 VFAGVGERTREGNDLYHE 258
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 65.7 bits (153), Expect = 4e-11
Identities = 33/124 (26%), Positives = 60/124 (48%)
Frame = +3
Query: 393 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 572
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 63 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122
Query: 573 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKXXXXXXXXXXXXXXTVLIME 752
+ + + +AP + +E +VTG+K VD L P + T + ++
Sbjct: 123 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAID 182
Query: 753 LIXN 764
I N
Sbjct: 183 TIIN 186
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 65.7 bits (153), Expect = 4e-11
Identities = 33/124 (26%), Positives = 60/124 (48%)
Frame = +3
Query: 393 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 572
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 90 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149
Query: 573 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKXXXXXXXXXXXXXXTVLIME 752
+ + + +AP + +E +VTG+K VD L P + T + ++
Sbjct: 150 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAID 209
Query: 753 LIXN 764
I N
Sbjct: 210 TIIN 213
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Frame = +3
Query: 363 KIDLPASXLEVAQ--HLGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRII 533
KI LP Q + +N +GT G+ + + +G +R PV + LGRI
Sbjct: 55 KITLPDGSKRSGQVLEISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIF 114
Query: 534 NVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAK 692
N G+PID+ P+ + I+ + +E++ TGI +D++ A+
Sbjct: 115 NGSGKPIDKGPPVLAEDFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIAR 167
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 45.6 bits (103), Expect = 5e-05
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +3
Query: 537 VIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKXXXXXXXX 716
V+G PID +GPI + + + +AP + +E +VTG+K VD L P +
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIG 162
Query: 717 XXXXXXTVLIMELIXN 764
T + ++ I N
Sbjct: 163 DRQTGKTAIAIDTIIN 178
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 45.6 bits (103), Expect = 5e-05
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Frame = +3
Query: 363 KIDLPASXLEVAQHLGENTVRTIAM--DGTEGLVRGQPVLD-SGSPIRIPVGAETLGRII 533
KI LP + + Q L + + + +GT G+ + +G R PV + LGRI
Sbjct: 67 KITLPNGQIRMGQVLESSKNKAVVQVFEGTTGVDAKFTTCEFTGDIFRSPVSLDMLGRIF 126
Query: 534 NVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAK 692
N G+PID+ P+ + I+ + + +E++ TGI +D++ A+
Sbjct: 127 NGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGISAIDVMNSIAR 179
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 31.9 bits (69), Expect = 0.62
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 444 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 560
T G+ G PVL +G P+ + +G +G I + I P+ +
Sbjct: 59 TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = -3
Query: 664 TFIPVTRISCCTDMSTNSGASA*IAAVLSVGMGPRS-SIGSPITL-MMRPRV---SAPTG 500
TF PVT +S + +T + + + P + + +P T+ M P + P
Sbjct: 468 TFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVP 527
Query: 499 IRMGEPESSTGCPRTKPSVPS 437
G P + T P TKP+VPS
Sbjct: 528 TTTGSPTTQTTAPVTKPTVPS 548
>U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam
protein 3 protein.
Length = 487
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 438 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPE 614
D +G + G+P+ +D G ++ P G E + ++ N GEP+DE A I + E
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDEEIWTIAGNEATIDSLKKE 209
Query: 615 FVDMSV 632
+++V
Sbjct: 210 HAELTV 215
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = -3
Query: 625 MSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPS 446
+ T G +A +A M RS P+T M P + P S+ PR
Sbjct: 9 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 68
Query: 445 VPSMAMVRTVFSP 407
P+ A +T P
Sbjct: 69 TPTAAPPKTCAPP 81
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = -3
Query: 625 MSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPS 446
+ T G +A +A M RS P+T M P + P S+ PR
Sbjct: 138 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 197
Query: 445 VPSMAMVRTVFSP 407
P+ A +T P
Sbjct: 198 TPTAAPPKTCAPP 210
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,147,838
Number of Sequences: 27780
Number of extensions: 432197
Number of successful extensions: 1146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -