Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J23
         (948 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.41 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   8.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +2

Query: 467 PPPXXXGVFFXGPXXPPPPKXPXPXVLGGG 556
           PPP   GV   GP  PPP   P P V  GG
Sbjct: 763 PPPPPPGVAGAGPPPPPP---PPPAVSAGG 789



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 461 KXPPPXXXGVFFXGPXXPPPPKXPXPXVLGG 553
           K PPP    V    P   P P  P   ++GG
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGG 760


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = -3

Query: 577 WGGXKPXPPPQNXGXGXFWGGRGXGAXKKNPXXXGGG 467
           +GG    PPP   G G F G  G G         GGG
Sbjct: 193 FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 503  PXXPPPPKXPXPXVLGGGXGF 565
            P  PPPP  P P V   G  F
Sbjct: 942  PAFPPPPPPPPPLVSAAGGKF 962


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,532,309
Number of Sequences: 5004
Number of extensions: 17598
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)