Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_J20
(943 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 31 1.8
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.1
11_06_0016 - 19284810-19284926,19285527-19286879 24 6.2
07_03_1136 + 24218601-24218734,24218769-24219906 28 9.4
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 9.4
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.7 bits (66), Expect = 1.8
Identities = 16/67 (23%), Positives = 21/67 (31%)
Frame = +1
Query: 442 PPPPXKXGXXXGXXXRXPPXKTXXPXXXXXGXGXPPPKGVXPFXXKXXETPXKKTLPTIG 621
PPPP G PP + P PPP +P ++ P I
Sbjct: 694 PPPPAPEGHMPSPPKSTPPVEKSPPTPESEASSPPPPAPEGHTPSPPKSSPPEEKSPPIP 753
Query: 622 PKKXXNP 642
P +P
Sbjct: 754 PTSHTSP 760
Score = 30.7 bits (66), Expect = 1.8
Identities = 22/87 (25%), Positives = 24/87 (27%)
Frame = +1
Query: 442 PPPPXKXGXXXGXXXRXPPXKTXXPXXXXXGXGXPPPKGVXPFXXKXXETPXKKTLPTIG 621
PPPP K PP P PP K + P P K+LP
Sbjct: 1241 PPPPEKSPPPAAPVILSPPAVKSLPPPAPVSLPPPPVKSLPPPAPVSLPPPVVKSLPPPA 1300
Query: 622 PKKXXNP*KXPXXXXFXQXGXPPPXXP 702
P P P PP P
Sbjct: 1301 PVSLPPPAVKPLPPPAPVSLPPPAVKP 1327
Score = 29.5 bits (63), Expect = 4.1
Identities = 21/97 (21%), Positives = 25/97 (25%)
Frame = +1
Query: 442 PPPPXKXGXXXGXXXRXPPXKTXXPXXXXXGXGXPPPKGVXPFXXKXXETPXKKTLPTIG 621
PPPP G PP + P PPP TP + P
Sbjct: 661 PPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSPPPPAPEGHMPSPPKSTPPVEKSPPTP 720
Query: 622 PKKXXNP*KXPXXXXFXQXGXPPPXXPXNXXXAXXPP 732
+ +P P PP P PP
Sbjct: 721 ESEASSP---PPPAPEGHTPSPPKSSPPEEKSPPIPP 754
Score = 29.5 bits (63), Expect = 4.1
Identities = 17/63 (26%), Positives = 22/63 (34%)
Frame = +1
Query: 442 PPPPXKXGXXXGXXXRXPPXKTXXPXXXXXGXGXPPPKGVXPFXXKXXETPXKKTLPTIG 621
PPPP G PP + P P P+ P K P +K+ P
Sbjct: 727 PPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPPTPEEYTPSPPK-SSPPEEKSPPPHS 785
Query: 622 PKK 630
P+K
Sbjct: 786 PEK 788
Score = 28.7 bits (61), Expect = 7.1
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +1
Query: 442 PPPPXKXGXXXGXXXRXPPXKTXXPXXXXXGXGXPP--PKGVXPFXXKXXETPXKKTLPT 615
PPPP G PP + P PP P+G P K P +K+ PT
Sbjct: 628 PPPPAPEGHTPSPPESTPPSEKSPPTPESKASSPPPPTPEGHTPSPPK-STPPTEKSPPT 686
Score = 28.3 bits (60), Expect = 9.4
Identities = 18/67 (26%), Positives = 19/67 (28%)
Frame = +1
Query: 442 PPPPXKXGXXXGXXXRXPPXKTXXPXXXXXGXGXPPPKGVXPFXXKXXETPXKKTLPTIG 621
PPPP K PP P PP K P P K+LP
Sbjct: 1209 PPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPPEKSPPPAAPVILSPPAVKSLPPPA 1268
Query: 622 PKKXXNP 642
P P
Sbjct: 1269 PVSLPPP 1275
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.5 bits (63), Expect = 4.1
Identities = 29/97 (29%), Positives = 31/97 (31%)
Frame = +1
Query: 442 PPPPXKXGXXXGXXXRXPPXKTXXPXXXXXGXGXPPPKGVXPFXXKXXETPXKKTLPTIG 621
PPPP PP K P PPPKG P P K P
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPP--------PPPPKGPPP-------PPPAKGPPPPP 357
Query: 622 PKKXXNP*KXPXXXXFXQXGXPPPXXPXNXXXAXXPP 732
P K +P P + G PPP P A PP
Sbjct: 358 PPKGPSP--PPPPPPGGKKGGPPPPPPKG--GASRPP 390
>11_06_0016 - 19284810-19284926,19285527-19286879
Length = 489
Score = 24.2 bits (50), Expect(2) = 6.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -2
Query: 420 PPXPPPXPXXXKXTXXXAXPFF 355
PP PPP P + A PF+
Sbjct: 89 PPPPPPPPPRPAPSLASALPFW 110
Score = 23.0 bits (47), Expect(2) = 6.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -2
Query: 450 GXGXFXXKKXPPXPPPXP 397
G G ++ PP PPP P
Sbjct: 74 GDGAAPDQEPPPSPPPPP 91
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.3 bits (60), Expect = 9.4
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -3
Query: 566 GXTPFGGGXPXPXXXXXGXWVXXGGXRXXXPKXXPXXXGGGG 441
G P GGG P P G GG P P GGGG
Sbjct: 89 GLPPGGGGAPGPLGGG-GARPPGGGGGGGPPSLPPGAGGGGG 129
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +1
Query: 445 PPPXKXGXXXGXXXRXPPXKTXXPXXXXXGXGXPPPKG 558
P P G G PP P G G PPP G
Sbjct: 338 PSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPG 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.146 0.496
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,642,912
Number of Sequences: 37544
Number of extensions: 170563
Number of successful extensions: 348
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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