Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_J20
(943 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 34 0.13
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 31 0.90
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.6
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 34.3 bits (75), Expect = 0.13
Identities = 21/69 (30%), Positives = 23/69 (33%)
Frame = +3
Query: 486 PXPAXXNPXXXXXGXGXXXXPPKGGXTVXPKXXGNPRKKNFAHNWPXKGXKPXKXPXXXG 665
P P+ G G PP GG P G P+ P G P G
Sbjct: 392 PPPSAFGAPQGPGGPGGYGPPPPGGPGA-PGSYGPPQGGPGGFGPPPPGGPGAYGPPPTG 450
Query: 666 FXPXGXPPP 692
F P G PPP
Sbjct: 451 FPPVGAPPP 459
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 31.5 bits (68), Expect = 0.90
Identities = 19/87 (21%), Positives = 22/87 (25%)
Frame = +1
Query: 442 PPPPXKXGXXXGXXXRXPPXKTXXPXXXXXGXGXPPPKGVXPFXXKXXETPXKKTLPTIG 621
PPPP P P PPP + P +P +
Sbjct: 470 PPPPGPPSSLLPLINTNAPPPPPMPSINGHAPNPPPPPPLLGIAPMSTNAPPPPPMPGMA 529
Query: 622 PKKXXNP*KXPXXXXFXQXGXPPPXXP 702
P P P G PPP P
Sbjct: 530 PLSTGAPTPPPPPPVGMANGGPPPPPP 556
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Frame = +1
Query: 538 GXPPPKGVXPFXXKXXETPXKKTLPTI--GPKKXXNP*KXPXXXXFXQXGXPPPXXPXNX 711
G PPP G+ P P LP I GP P P G PPP P
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPP----ISGGPPPPPPPPGG 767
Query: 712 XXAXXPP 732
PP
Sbjct: 768 CPPPPPP 774
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Frame = +1
Query: 538 GXPPPKGVXPFXXKXXETPXKKTLPTI--GPKKXXNP*KXPXXXXFXQXGXPPPXXPXNX 711
G PPP G+ P P LP I GP P P G PPP P
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPP----ISGGPPPPPPPPGG 767
Query: 712 XXAXXPP 732
PP
Sbjct: 768 CPPPPPP 774
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Frame = +1
Query: 538 GXPPPKGVXPFXXKXXETPXKKTLPTI--GPKKXXNP*KXPXXXXFXQXGXPPPXXPXNX 711
G PPP G+ P P LP I GP P P G PPP P
Sbjct: 295 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPP----ISGGPPPPPPPPGG 350
Query: 712 XXAXXPP 732
PP
Sbjct: 351 CPPPPPP 357
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +1
Query: 442 PPPPXKXGXXXGXXXRXPPXKTXXPXXXXXGXGXPPPKGVXP 567
PPPP G PP P G PPP G P
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 281
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = +1
Query: 442 PPPPXKXGXXXGXXXRXPPXKTXXPXXXXXGXGXPPPK-GVXPFXXKXXETPXKKTLP 612
PPPP PP T P G PPP+ G P +P +LP
Sbjct: 256 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 313
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +1
Query: 442 PPPPXKXGXXXGXXXRXPPXKTXXPXXXXXGXGXPPPKGVXP 567
PPPP G PP P G PPP G P
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 302
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = +1
Query: 442 PPPPXKXGXXXGXXXRXPPXKTXXPXXXXXGXGXPPPK-GVXPFXXKXXETPXKKTLP 612
PPPP PP T P G PPP+ G P +P +LP
Sbjct: 277 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 334
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +1
Query: 442 PPPPXKXGXXXGXXXRXPPXKTXXPXXXXXGXGXPPPKGVXP 567
PPPP G PP P G PPP G P
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 287
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = +1
Query: 442 PPPPXKXGXXXGXXXRXPPXKTXXPXXXXXGXGXPPPK-GVXPFXXKXXETPXKKTLP 612
PPPP PP T P G PPP+ G P +P +LP
Sbjct: 262 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 319
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.146 0.496
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,111,908
Number of Sequences: 27780
Number of extensions: 106359
Number of successful extensions: 279
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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