Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J19
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    31   0.28 
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    28   1.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.6  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   4.5  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   6.0  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    26   7.9  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   7.9  

>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 236 LYSLDCINFLFFYLAICIHYKYHSTE 159
           + S+  INF FFYL  C  Y YH+ E
Sbjct: 31  ILSVIFINFFFFYLCRCCVYFYHTLE 56


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 592 LDTIGAPPLHAPPPVSAAFRRLTVLVGSP 506
           ++T  + P+H PPP+++   R+T   GSP
Sbjct: 15  INTRLSTPVHIPPPINSESTRITPQHGSP 43


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 21/83 (25%), Positives = 38/83 (45%)
 Frame = +3

Query: 183  DADSEIEKKKIDAVQTIETIQSMIDVSAERLEGLRTQCSTSAELTQQEIRTLEGKLVKHF 362
            +  + + K   D  +   TI S+     +  +   +   TS E TQ+  RT+  KL +  
Sbjct: 1065 ELSTRVSKMLSDINEVDHTIASLSLKLFQAEDTKNSYDQTSPEATQERNRTISSKLAEME 1124

Query: 363  SQQLVIKANLDDQLRLKFSNVPN 431
             Q+   KA L +Q++   +N+ N
Sbjct: 1125 KQKNESKAAL-EQMKNYVTNIEN 1146


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 273 LEGLRTQCSTSAELTQQE 326
           LEGLRT C    ELT++E
Sbjct: 795 LEGLRTLCIAKRELTEEE 812


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +3

Query: 198 IEKKKIDAVQTIETIQSMIDVSAERLEGLRTQCSTSAELTQQEIRTLEGKLVKHFSQQLV 377
           +EK K+     I  I    +++    EG+ T+ S  A L  +      GKL +   +Q+ 
Sbjct: 357 LEKLKVKKSTMINEIVHRYNINEINEEGIMTEVSKYASLVNKNYEISSGKLKE---RQVA 413

Query: 378 IKANLD 395
           ++A ++
Sbjct: 414 VRARIE 419


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
 Frame = +3

Query: 180 MDADSEIEKKKIDAVQTIE----TIQSMIDVSAERLEGLRTQCSTSAELTQQEIRTLEGK 347
           +DAD ++     D V  +E     IQSM  +  ER + L++ C     L Q +I+ +E  
Sbjct: 26  IDADEDLLDDVPDDVDCVELIQSRIQSMASLGLERFKNLQSLC-----LRQNQIKKIES- 79

Query: 348 LVKHFSQQLVIKANLDDQLRLKFSNVPNL 434
                  + + + +L D L ++  N+ N+
Sbjct: 80  -----VPETLTELDLYDNLIVRIENLDNV 103


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 376  TSCCEKCFTSLPSRVRISCCVS 311
            T  CEKC++ +P      CC+S
Sbjct: 1250 TRICEKCYSLVPRMSCTFCCLS 1271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,017,957
Number of Sequences: 5004
Number of extensions: 55759
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)