Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J19
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0063 - 19372222-19372296,19373474-19373554,19373698-193738...    33   0.29 
01_05_0569 + 23343861-23344751,23344841-23344984,23345071-233453...    31   1.6  
12_02_0431 - 19000267-19000719                                         29   3.6  

>02_04_0063 -
           19372222-19372296,19373474-19373554,19373698-19373808,
           19373901-19374158
          Length = 174

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 13/65 (20%), Positives = 36/65 (55%)
 Frame = +3

Query: 162 STVIFVMDADSEIEKKKIDAVQTIETIQSMIDVSAERLEGLRTQCSTSAELTQQEIRTLE 341
           S +    + + EIE+KK++  + + ++   ++   +RL  +R +    ++ T++E+ T+ 
Sbjct: 44  SALSLFKEKEEEIERKKLEVREKVFSMLGRVEEETKRLAFIRQELEVMSDPTRREVETIR 103

Query: 342 GKLVK 356
            ++ K
Sbjct: 104 KRIDK 108


>01_05_0569 +
           23343861-23344751,23344841-23344984,23345071-23345309,
           23346096-23346185,23346617-23346644
          Length = 463

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -3

Query: 800 GXLAXXSGXSPVSWRXPPFLXGAVWVS--WXGRC 705
           G LA  +G  P+ WR PP L G   +   W G C
Sbjct: 137 GELAVVNGSWPIEWRPPPDLLGCASLRRLWLGLC 170


>12_02_0431 - 19000267-19000719
          Length = 150

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 378 IKANLDDQLRLKFSNVPNLAKWLRXGWAFA 467
           ++  LD+ LR   + +P LA WLR GWA A
Sbjct: 40  VRERLDELLRYLAAALPELAAWLR-GWADA 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,180,267
Number of Sequences: 37544
Number of extensions: 386845
Number of successful extensions: 1155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)