Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J18
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    27   4.8  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    27   4.8  
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    26   6.3  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   8.4  

>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 351 GAKVK-SVCTFEGNTLKQVQKAPERS 425
           G K K S C F  + L+Q+QK+ ERS
Sbjct: 86  GTKGKGSTCAFTSSILQQIQKSGERS 111


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 497 APESTRSSKRTLLRGRESVPPIHEHPAAQ 583
           AP++T SS   L + ++S+P  +EH  A+
Sbjct: 128 APQTTASSNTQLTQQQQSLPQTNEHQRAR 156


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 516 PVKGLYSEVGSRCRRFTNIP 575
           P+ GL+  VGSR R+ + IP
Sbjct: 114 PLSGLHQNVGSRTRKSSGIP 133


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 552 CRRFTNIPRHNYVYLASILYI 614
           C +F  +PR NY  L S L++
Sbjct: 860 CDQFATVPRENYANLVSQLHV 880


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,887
Number of Sequences: 5004
Number of extensions: 45912
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)