Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J18
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    76   5e-16
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    36   7e-04
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    36   7e-04
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   5.0  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 75.8 bits (178), Expect = 5e-16
 Identities = 36/62 (58%), Positives = 45/62 (72%)
 Frame = +3

Query: 240 VELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPE 419
           VEL ++   Y L T+S FK TE+KFK GEEFEE+  DG KVKSVCT +GN L QVQK  +
Sbjct: 41  VELTENNGLYTLKTTSPFKNTEIKFKLGEEFEEETVDGRKVKSVCTLDGNKLIQVQKGEK 100

Query: 420 RS 425
           ++
Sbjct: 101 QT 102



 Score = 57.6 bits (133), Expect = 1e-10
 Identities = 22/37 (59%), Positives = 33/37 (89%)
 Frame = +2

Query: 125 EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTP 235
           +F+GK+YK+ SSENFD+FMK +GVG++TRK  ++V+P
Sbjct: 3   DFLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSP 39



 Score = 41.9 bits (94), Expect = 8e-06
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +1

Query: 427 EVTYVREFGPEEMKAVMTAKDVTCTRVYKVQ 519
           + T  REF   EMKA+M   D+ CTRVYK+Q
Sbjct: 101 QTTIEREFSSTEMKAIMKVDDIICTRVYKIQ 131


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 35.5 bits (78), Expect = 7e-04
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 231 PR-TVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEE--DRADGAKVKSVCTFEGNTLK 398
           PR + EL K+GDE+   +SS   T    FK    FEE        K ++V + EGNT K
Sbjct: 33  PRPSFELSKNGDEWTFTSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFK 91



 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 125 EFVGKKYKMTSSENFDEFMKTIG 193
           +F GK ++  S  NF+EF K +G
Sbjct: 1   QFEGK-FQFVSQNNFEEFAKVLG 22


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 35.5 bits (78), Expect = 7e-04
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 231 PR-TVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEE--DRADGAKVKSVCTFEGNTLK 398
           PR + EL K+GDE+   +SS   T    FK    FEE        K ++V + EGNT K
Sbjct: 35  PRPSFELSKNGDEWTFTSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFK 93



 Score = 25.0 bits (52), Expect = 0.94
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 122 MEFVGKKYKMTSSENFDEFMKTIG 193
           ++F GK ++  S  NF+EF K +G
Sbjct: 2   VQFEGK-FQFVSQNNFEEFAKVLG 24


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -1

Query: 573 GCS*IGGTDSRPRSRVLLLDLVDSGASHVLSCHHSFHLLRAEFPDVSDFKTV 418
           GC          RSR+  L   D G S   S   +  L+R E  D  D +T+
Sbjct: 13  GCDEQTSRGDNDRSRIARLGRDDGGKSRQSSFEVTSLLMREETEDAEDTQTL 64


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 310 FISVVLKVEEVTKLYSSPSLRSSTV 236
           FIS+++  +E+  + +SP L + T+
Sbjct: 9   FISLIILNDEIYNIIASPQLNNPTL 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,746
Number of Sequences: 438
Number of extensions: 2961
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)