Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J17
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...   105   1e-23
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    31   0.29 
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    28   1.5  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   4.7  

>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score =  105 bits (251), Expect = 1e-23
 Identities = 57/124 (45%), Positives = 78/124 (62%)
 Frame = +2

Query: 338 LVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTNK 517
           LVAVSK  PVE ++EAYNAGQRHFGENY+ E   K    L+ +   D++WHFIG LQ++K
Sbjct: 26  LVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVE--LMPD---DVQWHFIGSLQSSK 80

Query: 518 INKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLE 697
             K+     L+ +ET+D+EK A  +N         +  L V +QVNTSGE+ K G+ P +
Sbjct: 81  CKKIASVKNLYSIETIDTEKKARLVNS---AREALQLPLNVYIQVNTSGEENKGGVTPSK 137

Query: 698 TXKL 709
             +L
Sbjct: 138 VLEL 141


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 296 VARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKAS 448
           +++   D+P+ AP  VAV++ +P EL     N  QR   E Y  E   K++
Sbjct: 374 ISKTFDDVPKRAP--VAVTEFRPSELFELNENKSQRSLAEEYEEEFLKKSN 422


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +2

Query: 533 GSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLR--VMVQVNTSGEQA--KSGLEPLET 700
           G   +  V T+  E LAD L  +W    ++   +R  ++++ +   E    ++ L   ++
Sbjct: 43  GVASILGVSTLKDEFLADGLESRWKTNGEKSSSIRYPLVMEFSQLKEDLTNRASLNGYDS 102

Query: 701 XKLLSTFSKTVQT 739
            KLLS F +T+++
Sbjct: 103 LKLLSPFLRTIKS 115


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 347  QQPILVLSEVGLYFFW 300
            ++P L+ + VGLYFFW
Sbjct: 1090 EKPYLIHNVVGLYFFW 1105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,076
Number of Sequences: 5004
Number of extensions: 65924
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)