Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J17
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-4|AAA79348.1|  244|Caenorhabditis elegans Hypothetical pr...   139   2e-33
AF047655-10|AAC04396.1|  335|Caenorhabditis elegans Hypothetical...    30   1.9  
Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine re...    29   5.9  

>U37429-4|AAA79348.1|  244|Caenorhabditis elegans Hypothetical
           protein F09E5.8 protein.
          Length = 244

 Score =  139 bits (337), Expect = 2e-33
 Identities = 70/134 (52%), Positives = 88/134 (65%)
 Frame = +2

Query: 335 RLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTN 514
           RLVAVSK K  +LI   Y+  QRHFGENYV EL +K+   ++  KC DI+WHFIG +Q+N
Sbjct: 31  RLVAVSKTKSADLIEACYSQNQRHFGENYVQELEEKSD--VLASKCLDIRWHFIGQVQSN 88

Query: 515 KINKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPL 694
           KI K+  SPGL+ VETV++EK A   +K+W K+      LRV+VQVNTSGE  K G+E  
Sbjct: 89  KIGKICNSPGLWCVETVETEKHARIFDKEWSKHGANLSPLRVLVQVNTSGEDNKGGIEIG 148

Query: 695 ETXKLLSTFSKTVQ 736
           E  KL     K  Q
Sbjct: 149 EAPKLAEFIRKECQ 162


>AF047655-10|AAC04396.1|  335|Caenorhabditis elegans Hypothetical
           protein C17B7.2 protein.
          Length = 335

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 407 FGENYVNELSDKASDPLILEKCKD 478
           F ENY  EL +K    ++ EKCKD
Sbjct: 265 FPENYEEELDEKKKKEMLQEKCKD 288


>Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical
           protein DH11.2 protein.
          Length = 411

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 281 QIEIAVARRSKDLPQIAPRLVA--VSKIKPVELIVEAYNAGQRHFG 412
           ++ +   + S DLPQ+   ++   VSK+ P EL+   ++   R FG
Sbjct: 10  RLPVVRVQDSSDLPQLPDEIIEIIVSKVLPTELVAYGWDQVSRSFG 55



 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 470 IFPVLMDHWLYHLIRLHSFLRSASGQRC 387
           + PV +   + HL+  HSFL + SG  C
Sbjct: 110 VLPVSLFSHIQHLLEKHSFLAATSGTAC 137


>Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical
           protein R06F6.6 protein.
          Length = 416

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +2

Query: 278 SQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAG 397
           +Q + A + +S+DLP IAP  V+  +I  V++ +E   +G
Sbjct: 344 AQYDSADSSQSEDLPDIAPESVSSEEIIEVDVNIEGSGSG 383


>AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine
           receptor, class sx protein8 protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 742 LGLDSFRECAQQLXCFQWF*AAFCLFTTSINLY 644
           L   SFR  A  L C Q F   FC+  + I++Y
Sbjct: 32  LTTSSFRSKASYLQCIQSFAQVFCILNSCIDVY 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,092,572
Number of Sequences: 27780
Number of extensions: 359652
Number of successful extensions: 743
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)