Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J15
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    29   0.67 
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     28   1.5  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    27   4.7  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   8.2  
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    26   8.2  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 193 TLPGKYSTA*RTRRPHSDPPSLTVSNRVSRTWTPASVS 306
           TLP   +T  +T R  + PPS   SNR +  + P SVS
Sbjct: 455 TLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVS 492


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 225 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPII 362
           N+  S+ +      Q  + +      IY PD   Y ++A LF PI+
Sbjct: 479 NEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPIL 524


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 725 PVGQKR-QALAACRKRSPSLNRKWSSMSCCWVSFDMPVRG 609
           P G+KR  A+AA + R+P L   +      + +FD  V+G
Sbjct: 43  PPGEKRISAIAAAKTRAPVLGGNFGVWGGLFSTFDCAVKG 82


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 357 IIEDYHNGFKKTDKHPPKNW 416
           I++  ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -1

Query: 250 VDPNEVFL--FFRLSNTSLVRYFFSSDLESDXLELAETSLQFLEGCGVDHCCGF 95
           ++ N +FL  FF +S+TS++   F    E     +A+  +Q      +D C G+
Sbjct: 295 LETNILFLSEFFEVSSTSILAKHFKLSEEQVDTVVADMVIQERLNASIDQCEGY 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,657
Number of Sequences: 5004
Number of extensions: 63924
Number of successful extensions: 226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)