Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J13
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0250 + 27153048-27154453,27154546-27154885                       67   1e-11
03_02_0938 - 12563250-12563681,12564098-12564514,12565333-125654...    48   1e-05
03_03_0156 + 14939355-14939435,14939559-14939624,14940331-149404...    30   2.1  
07_03_0756 - 21272122-21272784                                         30   2.8  
06_03_1024 - 26958473-26958661,26958750-26958815,26959234-269593...    30   2.8  
12_02_1118 + 26210322-26212559                                         28   8.4  

>02_05_0250 + 27153048-27154453,27154546-27154885
          Length = 581

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 34/75 (45%), Positives = 45/75 (60%)
 Frame = +2

Query: 386 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRS 565
           R KR+K+A+LLGY G  Y GMQ+NPG +TI             + + D    +   + R+
Sbjct: 45  RYKRRKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARA 104

Query: 566 SRTDKGVSAAEQVVS 610
           +RTDKGVSAA QVVS
Sbjct: 105 ARTDKGVSAAAQVVS 119


>03_02_0938 -
           12563250-12563681,12564098-12564514,12565333-12565477,
           12565574-12565722,12565836-12565948,12566423-12566458,
           12566558-12566816
          Length = 516

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
 Frame = +2

Query: 380 YERIKRKKMAMLLGYSGVEYYGMQRNPGVQ---TIXXXXXXXXXXXXYITQEDFENAQNA 550
           +E  ++K++ + +GY G EY G+Q+   +    TI             I + ++   Q  
Sbjct: 66  WESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKV 125

Query: 551 QFQRSSRTDKGVSAAEQVVSLKLPL 625
            ++RSSRTDKGV +   ++SLK+ +
Sbjct: 126 GWERSSRTDKGVHSLATMISLKMEI 150


>03_03_0156 +
           14939355-14939435,14939559-14939624,14940331-14940414,
           14940796-14940875,14941313-14941358,14941456-14941566,
           14942224-14942290,14942615-14942630,14942871-14942931,
           14943015-14943145,14943243-14943360,14944053-14944176,
           14944517-14944618,14944717-14944785,14946250-14946329
          Length = 411

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 554 FQRSSRTDKGVSAAEQVVSLKL 619
           + R  RTDKGVSA  QV+SL L
Sbjct: 141 YSRCGRTDKGVSATGQVISLFL 162


>07_03_0756 - 21272122-21272784
          Length = 220

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 329 GVCCTSLIAYSALYRLTYFLHL 264
           GVCC  LI + AL+++  FLHL
Sbjct: 187 GVCCFHLIDWLALFQVVRFLHL 208


>06_03_1024 -
           26958473-26958661,26958750-26958815,26959234-26959303,
           26959526-26959773,26959938-26960029,26960726-26960871,
           26961001-26961185,26961721-26961838,26961948-26962087
          Length = 417

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +2

Query: 386 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR- 562
           R +R    ++L Y G  + G Q+ PG+ T+               +     A++   +  
Sbjct: 117 RWERVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGC 176

Query: 563 ---SSRTDKGVSAAEQVVS 610
              + RTDKGV+A +QV S
Sbjct: 177 AVVAGRTDKGVTALQQVCS 195


>12_02_1118 + 26210322-26212559
          Length = 745

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = -1

Query: 315 LVNSLFGTISIDLFSSSFVTSAASITDSKR--ALVMAVLTGCLGKVLFKLLTNNLI 154
           L++ LF  + +   SS   T+ A+I  +K    LV+ ++  CLGK+   ++T+ L+
Sbjct: 255 LISGLF--LPLYFVSSGLKTNVATIRGAKSWGLLVLVIVNACLGKIGGTVITSLLV 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,631,368
Number of Sequences: 37544
Number of extensions: 366810
Number of successful extensions: 828
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)