Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J12
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M22751-1|AAA28106.1|  211|Caenorhabditis elegans protein ( C.ele...    29   3.4  
L15201-2|AAA27945.2|  200|Caenorhabditis elegans Male abnormal p...    29   3.4  
AF277990-1|AAG00458.1|  200|Caenorhabditis elegans MAB-5 protein.      29   3.4  

>M22751-1|AAA28106.1|  211|Caenorhabditis elegans protein (
           C.elegans DNA-bindingprotein (mab5) mRNA, 3' end. ).
          Length = 211

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -3

Query: 322 WTGRDRWWLGVERTVSSSSHGSLAANM*VLTRTGQLVSFSLCPIQIIYR*YIRNSKAML 146
           WTG D +W G   T SS S  S  +     +      + +L   ++    Y+ N K ML
Sbjct: 18  WTGDDSYWAGAGTTASSQSASSGTSASASSSAAAAAAANNLKTYELYNHTYMNNMKHML 76


>L15201-2|AAA27945.2|  200|Caenorhabditis elegans Male abnormal
           protein 5 protein.
          Length = 200

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -3

Query: 322 WTGRDRWWLGVERTVSSSSHGSLAANM*VLTRTGQLVSFSLCPIQIIYR*YIRNSKAML 146
           WTG D +W G   T SS S  S  +     +      + +L   ++    Y+ N K ML
Sbjct: 7   WTGDDSYWAGAGTTASSQSASSGTSASASSSAAAAAAANNLKTYELYNHTYMNNMKHML 65


>AF277990-1|AAG00458.1|  200|Caenorhabditis elegans MAB-5 protein.
          Length = 200

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -3

Query: 322 WTGRDRWWLGVERTVSSSSHGSLAANM*VLTRTGQLVSFSLCPIQIIYR*YIRNSKAML 146
           WTG D +W G   T SS S  S  +     +      + +L   ++    Y+ N K ML
Sbjct: 7   WTGDDSYWAGAGTTASSQSASSGTSASASSSAAAAAAANNLKTYELYNHTYMNNMKHML 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,322,511
Number of Sequences: 27780
Number of extensions: 340617
Number of successful extensions: 742
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)