Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J09
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888    100   1e-21
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949...    31   1.6  
03_01_0515 - 3864796-3865425                                           29   3.8  
11_06_0445 - 23679918-23680282,23680415-23683349                       29   5.0  
09_06_0342 + 22410674-22411060,22412219-22412299,22412376-224125...    29   6.6  
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319...    29   6.6  
05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515     29   6.6  

>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
          Length = 433

 Score =  100 bits (240), Expect = 1e-21
 Identities = 50/88 (56%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
 Frame = +2

Query: 623 TKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVNDSVTKSKFDNLYGCRESLL 802
           +KY  + + + G++EETTTGV  LY+M   G L  PAINVNDSVTKSKFDNLYGCR SL 
Sbjct: 156 SKYRKMKERLVGVSEETTTGVKRLYQMQETGALLFPAINVNDSVTKSKFDNLYGCRHSLP 215

Query: 803 DGI-KGQQT**LXESCVXAGYGDVGKGC 883
           DG+ +        +  V  GYGDVGKGC
Sbjct: 216 DGLMRATDVMIAGKVAVVCGYGDVGKGC 243



 Score = 80.6 bits (190), Expect = 2e-15
 Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
 Frame = +1

Query: 283 MPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETLIELGAEVQW-SSSNIYSTQDE 459
           MPGLMACR ++ P++  KGARI+GSLH T+Q AVLIETL  LG         ++      
Sbjct: 1   MPGLMACRAEFGPSQPFKGARISGSLHRTIQAAVLIETLTALGRRGPLVLLQHLLHAGPR 60

Query: 460 AAAALVAVGIPIYAWKGETDDEYIWCIEQTL 552
                      ++AWKGET +EY WC E+ L
Sbjct: 61  RRPPSPRDSAAVFAWKGETLEEYWWCTERCL 91


>05_04_0048 -
           17493775-17494431,17494506-17494801,17494851-17494958,
           17495463-17495544,17495561-17495740
          Length = 440

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
 Frame = +1

Query: 256 KEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTV------QTAVLIETLIELGAE 417
           KE+M    E PG++  R     + +++   IA  LH  V      QTA L+  +  L  +
Sbjct: 197 KELMEGVSE-PGVLQSRLSKITSFLVQATSIAAGLHDEVPLQIRGQTAALVTQISGLEQQ 255

Query: 418 VQWSSSNIYSTQDE 459
           V+  S  + ST+DE
Sbjct: 256 VEELSKKLCSTEDE 269


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = -1

Query: 537 TPNILVISFSLPGIDGYSYGNQC-SCGLVLCTINVTAGPLYLCSQFY*SLNKNRCLYCHV 361
           +P   V  +++  +  ++  + C + G  L  +NV +G    CS        N  L  +V
Sbjct: 123 SPVTNVNDYTIQQVGKFAVQSYCLNTGAKLVYVNVVSGQTQPCS----GGGSNYQLVINV 178

Query: 360 *AAGYSGTFEYFSWSIFPTTCHKAWHF 280
            A   +  +  F W I  TT  K W F
Sbjct: 179 AAGVRTAQYSVFVWGILGTTTWKLWSF 205


>11_06_0445 - 23679918-23680282,23680415-23683349
          Length = 1099

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 569  KPLNMILDDGGDLTNLVHTKYPDLLKDV 652
            +P + I  DG DL N V + +PD + D+
Sbjct: 1007 QPTDEIFQDGMDLHNFVESAFPDQISDI 1034


>09_06_0342 +
           22410674-22411060,22412219-22412299,22412376-22412579,
           22412765-22412959,22413064-22413228,22413501-22413761,
           22413908-22414126,22414285-22414504,22414591-22414613,
           22414728-22414766
          Length = 597

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +1

Query: 208 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 387
           +PP  +  ++    GR+     EKE   L   +R+   A+IL G R  G+ ++ V+ A +
Sbjct: 33  RPP--LQQQQQVGLGRRGRAREEKERTKLRERQRRAITARILAGLRRHGNYNLRVR-ADI 89

Query: 388 IETLIELGAEVQW 426
            E +  L  E  W
Sbjct: 90  NEVIAALAREAGW 102


>09_04_0139 +
           15030753-15031208,15031298-15031523,15031599-15031981,
           15032353-15032685,15032902-15033010,15033089-15033465
          Length = 627

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 590 DDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKM 703
           DD   + +L H  Y D +KD K   E     +HN  KM
Sbjct: 448 DDDNFIISLDHKHYADHIKDHKADAEYLNKPIHNYSKM 485


>05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515
          Length = 785

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = -1

Query: 732 AGTFKSPSRNILYKLCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSSKI 583
           AG+ + P  ++ +    P+ +++  PF SF+   ++V +  V SPP++ +
Sbjct: 98  AGSARLPYPDVKWAAVPPLAIAAGAPFASFRAERWIVVS--VSSPPTAAL 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,629,034
Number of Sequences: 37544
Number of extensions: 466103
Number of successful extensions: 1092
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)