Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J07
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       87   2e-19
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   0.68 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 87.0 bits (206), Expect = 2e-19
 Identities = 48/128 (37%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
 Frame = +3

Query: 420 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 599
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+  AQT
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQT 242

Query: 600 GSGKTLAYILPAIVHINNQP----PIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 767
           GSGKT A+ +P I  +  +            P  ++++PTREL  QI Q    F   S +
Sbjct: 243 GSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSIL 302

Query: 768 RNTCVFGG 791
           +    +GG
Sbjct: 303 KTVVAYGG 310


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 527 TDAHSSSRLADSYVWKEFSWRSPNGF 604
           +D+ +  +L + Y WK   +  PNG+
Sbjct: 16  SDSQAQEKLKNIYSWKALEFAFPNGY 41


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 140 DYFSDLVEDVYLNYGCL 90
           DY+ DL E +Y+  GCL
Sbjct: 300 DYYPDLNEWLYILSGCL 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,680
Number of Sequences: 438
Number of extensions: 4719
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)