Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J05
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical pr...    40   0.002
AF273803-1|AAG15152.1|  433|Caenorhabditis elegans nuclear recep...    30   1.9  
AY305829-1|AAR11974.1|  281|Caenorhabditis elegans nuclear recep...    29   3.3  
AF016438-6|AAZ32805.1|  284|Caenorhabditis elegans Nuclear hormo...    29   3.3  
AF016438-5|AAB65893.2|  408|Caenorhabditis elegans Nuclear hormo...    29   3.3  
U58753-4|AAC24435.2|  312|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical
           protein W04G3.4 protein.
          Length = 588

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = -2

Query: 500 YYCQFICILSMYIS--TRISNFNFLVVRDIQIKITITPSSFTIKFRDVANNITTGLNIYN 327
           YYCQ    +S   S    I N N   ++D+ + +     +  I+ +D  NN+  G NI+ 
Sbjct: 476 YYCQSDMTVSNIHSYVLVIQNHNNFTIKDVNLSLKTNDKNVIIRLQDSVNNLA-GFNIFG 534

Query: 326 ERE*YNVSLCV 294
           ++E  N+ LC+
Sbjct: 535 QQETINLLLCI 545


>AF273803-1|AAG15152.1|  433|Caenorhabditis elegans nuclear receptor
           NHR-56 protein.
          Length = 433

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 655 NVGNKTFCIPWXCKYYVHGIKHAIKECQLRDSVVANL--RK*RHLRHLTS 798
           NV  +TFC    CK   HGI +  K+C+LR  + A +   K +H R L S
Sbjct: 63  NVDGETFCPIGNCKIDKHGIFYC-KKCRLRICLEAGMDANKFQHDRDLIS 111


>AY305829-1|AAR11974.1|  281|Caenorhabditis elegans nuclear receptor
           NHR-56 protein.
          Length = 281

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 655 NVGNKTFCIPWXCKYYVHGIKHAIKECQLRDSVVANL--RK*RHLRHLTS 798
           NV  +TFC    CK   HG K   K+C+LR  + A +   K +H R L S
Sbjct: 35  NVDGETFCPIGNCKIDKHG-KFYCKKCRLRICLEAGMDANKFQHDRDLIS 83


>AF016438-6|AAZ32805.1|  284|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 56, isoform b protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 655 NVGNKTFCIPWXCKYYVHGIKHAIKECQLRDSVVANL--RK*RHLRHLTS 798
           NV  +TFC    CK   HG K   K+C+LR  + A +   K +H R L S
Sbjct: 38  NVDGETFCPIGNCKIDKHG-KFYCKKCRLRICLEAGMDANKFQHDRDLIS 86


>AF016438-5|AAB65893.2|  408|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 56, isoform a protein.
          Length = 408

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 655 NVGNKTFCIPWXCKYYVHGIKHAIKECQLRDSVVANL--RK*RHLRHLTS 798
           NV  +TFC    CK   HG K   K+C+LR  + A +   K +H R L S
Sbjct: 38  NVDGETFCPIGNCKIDKHG-KFYCKKCRLRICLEAGMDANKFQHDRDLIS 86


>U58753-4|AAC24435.2|  312|Caenorhabditis elegans Hypothetical
           protein W03B1.7 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 210 IDFINIKSQNYIAYFGCIQSVFVT*YPKHTQTNIVSFPFIIYVQTCCYIISD 365
           ID  N  + +Y++YF     +F+T +P   + +IV  P +     C  +IS+
Sbjct: 214 IDDNNRLNSSYVSYFSLAALLFITAFPYTLKASIVR-PLVTVGTGCLMLISE 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,134,928
Number of Sequences: 27780
Number of extensions: 356231
Number of successful extensions: 654
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)