Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J05
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    23   3.7  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    23   3.7  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    23   3.7  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    23   3.7  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    23   3.7  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    23   3.7  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    23   3.7  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    23   3.7  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   3.7  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   3.7  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   4.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   8.6  

>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 426 SRHTN*NYNNTLKFYNKISRRR**YN-NRFEHI 331
           S   N NYNN    YNK +  +  YN N  E I
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 426 SRHTN*NYNNTLKFYNKISRRR**YN-NRFEHI 331
           S   N NYNN    YNK +  +  YN N  E I
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 426 SRHTN*NYNNTLKFYNKISRRR**YN-NRFEHI 331
           S   N NYNN    YNK +  +  YN N  E I
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 426 SRHTN*NYNNTLKFYNKISRRR**YN-NRFEHI 331
           S   N NYNN    YNK +  +  YN N  E I
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 426 SRHTN*NYNNTLKFYNKISRRR**YN-NRFEHI 331
           S   N NYNN    YNK +  +  YN N  E I
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 426 SRHTN*NYNNTLKFYNKISRRR**YN-NRFEHI 331
           S   N NYNN    YNK +  +  YN N  E I
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 426 SRHTN*NYNNTLKFYNKISRRR**YN-NRFEHI 331
           S   N NYNN    YNK +  +  YN N  E I
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 426 SRHTN*NYNNTLKFYNKISRRR**YN-NRFEHI 331
           S   N NYNN    YNK +  +  YN N  E I
Sbjct: 87  SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 426 SRHTN*NYNNTLKFYNKISRRR**YN-NRFEHI 331
           S   N NYNN    YNK +  +  YN N  E I
Sbjct: 320 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQI 352


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 426 SRHTN*NYNNTLKFYNKISRRR**YN-NRFEHI 331
           S   N NYNN    YNK +  +  YN N  E I
Sbjct: 320 SLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQI 352


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -1

Query: 414 N*NYNNTLKFYNKISRRR**YN-NRFEHI 331
           N NYNN    YNK +  +  YN N  E I
Sbjct: 91  NYNYNNNYNNYNKHNYNKLYYNINYIEQI 119


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 408 NYNNTLKFYNKISRRR**YNNRFEHI 331
           NYNN    YN  +     YNN ++ +
Sbjct: 326 NYNNYNNNYNNYNNYNNNYNNNYKKL 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,934
Number of Sequences: 438
Number of extensions: 5344
Number of successful extensions: 28
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)