Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J04
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025451-4|AAL16306.1|  567|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    29   5.9  
AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF025451-4|AAL16306.1|  567|Caenorhabditis elegans Hypothetical
           protein C24H12.4b protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 612 IFIVLSGFATSDLSVDFCDARSGGRSLWKNASKRGLFTVPGLLLAFCS 469
           +F+ LS       +++ CD      S+W       + T PG LL  CS
Sbjct: 115 LFVKLSQALPFLQAINLCDINEEENSVWLEDRSHVVVTTPGKLLRMCS 162


>AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical
           protein C24H12.4a protein.
          Length = 634

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 612 IFIVLSGFATSDLSVDFCDARSGGRSLWKNASKRGLFTVPGLLLAFCS 469
           +F+ LS       +++ CD      S+W       + T PG LL  CS
Sbjct: 182 LFVKLSQALPFLQAINLCDINEEENSVWLEDRSHVVVTTPGKLLRMCS 229


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -1

Query: 581 LT*ASIFVMLVQGGGAYGKTPANAAFLRFLA----FCWPFAHMFFPAL 450
           +T  S+  +L  G G Y  TPA A F +F+A    F W +   FF A+
Sbjct: 369 ITVTSLTSVLSFGIGTYSTTPAIAIFCKFIALAIMFDWFYQLTFFAAV 416


>AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical
           protein Y24D9A.5 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 416 GGNTVIHRIRGITQERTCEQKASKRPGTVK 505
           GG +V +R   + Q+++   ++SKRPG ++
Sbjct: 167 GGKSVFYRFTNLIQKKSFSVRSSKRPGILQ 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,225,116
Number of Sequences: 27780
Number of extensions: 297357
Number of successful extensions: 810
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)