Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J03
         (911 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   127   1e-29
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    29   6.1  
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n...    29   6.1  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  127 bits (306), Expect = 1e-29
 Identities = 61/106 (57%), Positives = 75/106 (70%), Gaps = 3/106 (2%)
 Frame = +2

Query: 101 MPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAW 280
           +PK +   IYEYLF EGV VAKKD++A  H  +E + NL+VIK ++SL SR  VKEQFAW
Sbjct: 3   IPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQFAW 62

Query: 281 RHFYWYLTNEGIEYLRIFLHLPPEIVPATLK---RSVRTETVRRGP 409
           RH+YWYLT+ GI YLR +L LP EIVPAT+K   R +R     R P
Sbjct: 63  RHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHEDRAP 108


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 417 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 539
           + D+ + S++D +  ++TPA     P  KKA+    S+D E
Sbjct: 432 KADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDE 472



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 417 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFK 545
           + D+ + S++D +  ++TPA     P  KKA+    S+D E K
Sbjct: 279 KADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKK 321


>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
            isoform a protein.
          Length = 1702

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 540  IQDQLSLDQHQPFYHEVQHQGQQE 469
            +Q+Q +  Q Q F H+ QHQ QQE
Sbjct: 1183 MQEQSNEQQSQVFQHQHQHQAQQE 1206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,995,956
Number of Sequences: 27780
Number of extensions: 281273
Number of successful extensions: 806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)