Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J01
         (1323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.4  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/67 (23%), Positives = 20/67 (29%)
 Frame = +1

Query: 694 RPTXKXPXXPXXTAPTRXSXPPXAQXXXAXXXXAPDXKRPXTXXXTTPPXTXLPNXXXXX 873
           RP    P  P    P+  S PP            P   +P     + P    LP+     
Sbjct: 138 RPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197

Query: 874 PXTXPVP 894
           P   P P
Sbjct: 198 PPKVPPP 204



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/64 (23%), Positives = 18/64 (28%)
 Frame = +2

Query: 653 PTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPTXSAPXPXRXP 832
           P+ P P T     R     P +    PP P    P     P       P      P + P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184

Query: 833 HRRP 844
              P
Sbjct: 185 PSAP 188



 Score = 26.6 bits (56), Expect = 7.7
 Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
 Frame = +2

Query: 602 PKAAHXXXHPXRXXXKAPTXPXPATXXPXXRXQPXXPXKXPXXPPQ-PGXPXPXXHXXPX 778
           P  A     P +      + P PA      +  P  P      PP  P  P P     P 
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPV 211

Query: 779 QXXXAXPTXSAPXPXRXPH 835
               + P+  AP     P+
Sbjct: 212 ANTSSRPSSFAPPAGHAPN 230


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +2

Query: 650  APTXPXPATXXPXXRXQPXXPXKXPXXPPQP 742
            APT P P    P     P  P   P  PP P
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,661
Number of Sequences: 5004
Number of extensions: 10859
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 725319970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)