Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_J01
(1323 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 40 0.006
08_01_0059 - 394001-394708 34 0.29
09_02_0543 + 10427321-10428315,10428440-10429154 33 0.67
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 33 0.67
12_02_1174 - 26696869-26698191 32 1.2
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 32 1.2
09_06_0081 + 20745627-20748144,20748211-20748308 31 2.7
11_06_0610 - 25449085-25453284 30 3.6
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 6.2
03_01_0515 - 3864796-3865425 29 6.2
01_06_0146 + 26969011-26969995,26970878-26970930 29 6.2
02_05_0686 - 30900748-30902167,30903442-30904742 29 8.2
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 39.5 bits (88), Expect = 0.006
Identities = 21/83 (25%), Positives = 26/83 (31%)
Frame = +2
Query: 572 HXTKHXPRXXPKAAHXXXHPXRXXXKAPTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXP 751
H K P+ PK + P P P P + +P P P P+P P
Sbjct: 155 HGPKPGPKPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKP 214
Query: 752 XPXXHXXPXQXXXAXPTXSAPXP 820
P P Q P P P
Sbjct: 215 GPKPKPGPPQPWWPIPFPKPPCP 237
>08_01_0059 - 394001-394708
Length = 235
Score = 33.9 bits (74), Expect = 0.29
Identities = 24/73 (32%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Frame = +2
Query: 629 PXRXXXKAPTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPT-X 805
P +AP P PAT P R P P P PP P P P P P
Sbjct: 3 PPPPPRRAP--PPPATPPPPPRRAPPPP-SPPIRPPPPPTPRPYAPPPPSHPLAPPPPHI 59
Query: 806 SAPXPXRXPHRRP 844
S P P P P
Sbjct: 60 SPPAPVPPPPSPP 72
Score = 30.7 bits (66), Expect = 2.7
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = +2
Query: 653 PTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPTXSAPXPXRXP 832
P P P P P P + P P P P P P A P S P P
Sbjct: 2 PPPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPP----PPTPRPYAPPPPSHPLAPPPP 57
Query: 833 HRRP 844
H P
Sbjct: 58 HISP 61
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 32.7 bits (71), Expect = 0.67
Identities = 21/73 (28%), Positives = 22/73 (30%), Gaps = 1/73 (1%)
Frame = +2
Query: 629 PXRXXXKAPTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPTXS 808
P + AP P PA P P P P PP P P P P P
Sbjct: 7 PIQQDSPAPPRPTPA---PQATPPPAIPESGPPPPPAPDMPPPPPTPAPQSSPAPPPAPD 63
Query: 809 -APXPXRXPHRRP 844
P P P P
Sbjct: 64 MTPPPGPGPAAAP 76
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 32.7 bits (71), Expect = 0.67
Identities = 16/61 (26%), Positives = 18/61 (29%)
Frame = +2
Query: 650 APTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPTXSAPXPXRX 829
+P P P T P P P P P P P P + P P P
Sbjct: 36 SPIPPSPTTCYPVSSAAPTAPPPKPSPTPPPASPPPAPTPPQTRPPSPPPQQQQPRPVSP 95
Query: 830 P 832
P
Sbjct: 96 P 96
>12_02_1174 - 26696869-26698191
Length = 440
Score = 31.9 bits (69), Expect = 1.2
Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Frame = +2
Query: 635 RXXXKAPTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXA--XPTXS 808
R + P P P P P P P PP+P P Q + P+
Sbjct: 132 RTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPP 191
Query: 809 APXPXRXPHRRPXXSQ 856
P P R P +P Q
Sbjct: 192 PPPPTRPPSVKPPVVQ 207
Score = 30.7 bits (66), Expect = 2.7
Identities = 20/67 (29%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Frame = +2
Query: 653 PTXPXPATXX---PXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPTXSAPXPX 823
P P P T P R P P P PP P P P P + P P P
Sbjct: 124 PPPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPP---PPRPPSVKPPVVQPKPQ 180
Query: 824 RXPHRRP 844
P +P
Sbjct: 181 PPPSLQP 187
Score = 30.7 bits (66), Expect = 2.7
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +2
Query: 653 PTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPTXSAPXPXRXP 832
P P P P + P P PP P P P + P PT P P P
Sbjct: 244 PQPPPPPPRAPVKMPRVLEPKPSPP-PPSPLPPPPEDYWSPTAVTPPEPTKPKPPPPSPP 302
Score = 29.5 bits (63), Expect = 6.2
Identities = 17/61 (27%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Frame = +2
Query: 653 PTXPXPATXXPXXRXQPXXPXKXP-XXPPQPGXPXPXXHXXPXQXXXAXPTXSAPXPXRX 829
PT P P+ P P P P P+P P P P S P P
Sbjct: 214 PTLPPPSPPPPPPTVPPRTPGDTPAVVEPKPQPPPPPPRAPVKMPRVLEPKPSPPPPSPL 273
Query: 830 P 832
P
Sbjct: 274 P 274
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 31.9 bits (69), Expect = 1.2
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = +2
Query: 653 PTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPTXSAPXPXRXP 832
P P P P P P P PP P P P A P +AP P P
Sbjct: 129 PPPPPPPARTPMPTPTPT-PTPTPTRPPVPVWAAPLPARTPTPTPSAPPRAAAPSPAGTP 187
Query: 833 HRRP 844
P
Sbjct: 188 SPSP 191
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 30.7 bits (66), Expect = 2.7
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +2
Query: 629 PXRXXXKAPTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXP 751
P APT P PAT P P P + PP PG P
Sbjct: 344 PRTLAPPAPTPPAPATPVP----MPPTPTRLVPTPPAPGPP 380
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.3 bits (65), Expect = 3.6
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Frame = +1
Query: 682 SSXPRPTXKX--PXXPXXTAPTRXSXPPXAQXXXAXXXXAPDXKRPXTXXXTTPPXTXLP 855
SS P PT + P P T PT S P + AP+ P + +TPP P
Sbjct: 659 SSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSPPPPAPEGHMP-SPPKSTPPVEKSP 717
Query: 856 NXXXXXPXTXPVP 894
+ P P
Sbjct: 718 PTPESEASSPPPP 730
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.5 bits (63), Expect = 6.2
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +2
Query: 653 PTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXP 775
P P PAT P P P P PP P P P P
Sbjct: 1161 PPSPPPATPPPPPPLSPSLP-PPPPPPPLPSGPPPQPAPPP 1200
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +2
Query: 662 PXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPTXSAPXPXRXPHRR 841
P P P P P P PP P P P P +A P P
Sbjct: 48 PPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPP 107
Query: 842 P 844
P
Sbjct: 108 P 108
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 29.5 bits (63), Expect = 6.2
Identities = 28/120 (23%), Positives = 34/120 (28%), Gaps = 1/120 (0%)
Frame = +2
Query: 488 APXDXXQPDPXRXXXDPRTXAXXXXXXXHXTKHXPRXXPKAAHXXXHPXRXXXKAPTXPX 667
+P P+P D ++ H P P+ P APT P
Sbjct: 3 SPIHSPPPEPATDGDDAQSHPPPPTP--HPATDPPPISPQNPTPPPPPLPASAAAPTTPS 60
Query: 668 PATXXPXXRXQP-XXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPTXSAPXPXRXPHRRP 844
P R P P P P P P + P Q A P AP P P
Sbjct: 61 PNHSGDPSRPIPSQAPAPPPPPTADPSPPLPHDNRTP-QPRAAPPPAPAPDQPAPPSPPP 119
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 8.2
Identities = 23/91 (25%), Positives = 26/91 (28%), Gaps = 4/91 (4%)
Frame = +2
Query: 629 PXRXXXKAPTXPXP----ATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAX 796
P + AP P P P P P K P PP P P P P
Sbjct: 318 PPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGP 377
Query: 797 PTXSAPXPXRXPHRRPXXSQIXTXXXQXQXR 889
P P P R P + T Q +
Sbjct: 378 P---PPPPKGGASRPPAAPGVPTGSADQQAK 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,808,329
Number of Sequences: 37544
Number of extensions: 173738
Number of successful extensions: 775
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4143716112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -