Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J01
         (1323 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034003-1|AAH34003.1|  600|Homo sapiens PRR12 protein protein.        33   1.8  
AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein.     33   1.8  
AY494951-1|AAS82582.1| 1250|Homo sapiens lamellipodin protein.         33   3.1  
AJ584699-1|CAE48361.1| 1250|Homo sapiens RAPH1 protein protein.        33   3.1  
AB051468-1|BAB21772.1| 1236|Homo sapiens KIAA1681 protein protein.     33   3.1  
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot...    32   5.4  
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.           32   5.4  

>BC034003-1|AAH34003.1|  600|Homo sapiens PRR12 protein protein.
          Length = 600

 Score = 33.5 bits (73), Expect = 1.8
 Identities = 19/59 (32%), Positives = 19/59 (32%)
 Frame = +2

Query: 668 PATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPTXSAPXPXRXPHRRP 844
           P T  P    QP  P   P  PPQP  P P     P       P    P P   P   P
Sbjct: 94  PPTPPPAPTPQPQPPPPPP--PPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPP 150


>AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein.
          Length = 1217

 Score = 33.5 bits (73), Expect = 1.8
 Identities = 19/59 (32%), Positives = 19/59 (32%)
 Frame = +2

Query: 668 PATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPTXSAPXPXRXPHRRP 844
           P T  P    QP  P   P  PPQP  P P     P       P    P P   P   P
Sbjct: 639 PPTPPPAPTPQPQPPPPPP--PPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPP 695


>AY494951-1|AAS82582.1| 1250|Homo sapiens lamellipodin protein.
          Length = 1250

 Score = 32.7 bits (71), Expect = 3.1
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +2

Query: 653 PTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPTXSA 811
           P  P P    P    QP  P   P  PP P  P P     P     A    SA
Sbjct: 608 PLSPQPKIVTPYTASQPSPPLPPPPPPPPPPPPPPPPPPPPLPSQSAPSAGSA 660


>AJ584699-1|CAE48361.1| 1250|Homo sapiens RAPH1 protein protein.
          Length = 1250

 Score = 32.7 bits (71), Expect = 3.1
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +2

Query: 653 PTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPTXSA 811
           P  P P    P    QP  P   P  PP P  P P     P     A    SA
Sbjct: 608 PLSPQPKIVTPYTASQPSPPLPPPPPPPPPPPPPPPPPPPPLPSQSAPSAGSA 660


>AB051468-1|BAB21772.1| 1236|Homo sapiens KIAA1681 protein protein.
          Length = 1236

 Score = 32.7 bits (71), Expect = 3.1
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +2

Query: 653 PTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPTXSA 811
           P  P P    P    QP  P   P  PP P  P P     P     A    SA
Sbjct: 594 PLSPQPKIVTPYTASQPSPPLPPPPPPPPPPPPPPPPPPPPLPSQSAPSAGSA 646


>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
           protein.
          Length = 3144

 Score = 31.9 bits (69), Expect = 5.4
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +2

Query: 653 PTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXP 775
           P  P P    P  + QP  P   P  PP P  P P     P
Sbjct: 46  PPPPPPQLPQPPPQAQPLLPQPQPPPPPPPPPPGPAVAEEP 86


>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
          Length = 3144

 Score = 31.9 bits (69), Expect = 5.4
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +2

Query: 653 PTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXP 775
           P  P P    P  + QP  P   P  PP P  P P     P
Sbjct: 46  PPPPPPQLPQPPPQAQPLLPQPQPPPPPPPPPPGPAVAEEP 86


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,104,584
Number of Sequences: 237096
Number of extensions: 918959
Number of successful extensions: 3403
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3112
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 19156088040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)