Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_J01
         (1323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical pr...    30   4.2  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    30   4.2  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      30   4.2  
AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.    30   4.2  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    29   7.3  
AC024788-3|AAF60614.2|   98|Caenorhabditis elegans Caenacin (cae...    29   7.3  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   9.7  

>Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical
           protein C02C6.1b protein.
          Length = 838

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 662 PXPATXXPXXRXQPXXPXKXPXXPPQPGXPXP 757
           P PA   P  R  P  P   P  PP PG   P
Sbjct: 767 PRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPP 798


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 662 PXPATXXPXXRXQPXXPXKXPXXPPQPGXPXP 757
           P PA   P  R  P  P   P  PP PG   P
Sbjct: 767 PRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPP 798


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 662 PXPATXXPXXRXQPXXPXKXPXXPPQPGXPXP 757
           P PA   P  R  P  P   P  PP PG   P
Sbjct: 767 PRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPP 798


>AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.
          Length = 838

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 662 PXPATXXPXXRXQPXXPXKXPXXPPQPGXPXP 757
           P PA   P  R  P  P   P  PP PG   P
Sbjct: 767 PRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPP 798


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 21/70 (30%), Positives = 21/70 (30%)
 Frame = +2

Query: 647 KAPTXPXPATXXPXXRXQPXXPXKXPXXPPQPGXPXPXXHXXPXQXXXAXPTXSAPXPXR 826
           K    P P    P     P  P      P  PG P P     P       PT   P P  
Sbjct: 222 KPSEPPSPGPVDPSDEPSPSDP------PGPPGPPGPPTRRPPGPP--GPPTRRPPGPPG 273

Query: 827 XPHRRPXXSQ 856
            P RRP   Q
Sbjct: 274 PPTRRPPGHQ 283


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
 Frame = -1

Query: 756 GXGXPGWGGXXGXXWGFXG----WXRXXGXXVAGXGXVG 652
           G G  GWGG  G  WG  G    W    G    G G  G
Sbjct: 58  GGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGG 96


>AC024788-3|AAF60614.2|   98|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 6 protein.
          Length = 98

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = -1

Query: 756 GXGXPGWGGXXG-XXWGFXGWXRXXGXXVAGXGXVG 652
           G G P WGG  G   WG  GW R       G G  G
Sbjct: 61  GWGRPMWGGGWGRRGWG-GGWGRRGWGGYGGYGGYG 95


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
 Frame = +2

Query: 671 ATXXPXXRXQPXXPXKXPXXP-PQPGXPXPXXHXXPXQXXXAXPTXSAPXPXRXPH 835
           AT     + Q   P   P    PQP  P P     P     A P  +AP P   P+
Sbjct: 2   ATAAEEYKSQTTYPESAPAATTPQPPPPPPPPKPAPYVEQSAQPQQTAPPPPPAPY 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,951,679
Number of Sequences: 27780
Number of extensions: 105337
Number of successful extensions: 280
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3704777368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)