Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_I21
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    91   1e-19
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    32   0.093
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    29   1.1  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   4.6  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   4.6  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   6.1  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   6.1  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   6.1  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    26   8.1  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    26   8.1  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 45/82 (54%), Positives = 52/82 (63%)
 Frame = +2

Query: 176 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINEND 355
           K   EHINLKV+GQDN  V FKIKK T   KLM  YC R G SM  +RF  DG+ I  + 
Sbjct: 30  KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQ 89

Query: 356 TPTSLEMEEGDTIEVYQQQTGG 421
           TP  L+ME+GD IE   +Q GG
Sbjct: 90  TPAELDMEDGDQIEAVLEQLGG 111


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 32.3 bits (70), Expect = 0.093
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 260 LRKLMNAYCDRAGLSM-QVVRFRFDGQPINENDTPTSLEMEEGDTIEV 400
           ++ L+  YC    +S  + +R  F+G+ ++ ND   S E+E+ D + V
Sbjct: 356 VKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSV 403


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
 Frame = -3

Query: 720 QSCLRRRVN*TYHNGIVEVTYSIWYTYNLPYHKLFETHNALRSSAMLLCVTKLLPNTFTD 541
           Q+ + + V   + N   + T +  + Y L   K FET N      M+  V    P T TD
Sbjct: 2   QTAMNKYVETAFQNQ--KTTLTSLFNYLLQNWKSFETCNTKERELMVQQVDSKKPETPTD 59

Query: 540 TNDVSLKLT*G*SLRRVHL---IDFDPLEMVN 454
              ++ KL  G    RVHL   +D++ L   N
Sbjct: 60  LEPLANKLE-GPLSERVHLNTTLDYEVLRGQN 90


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 674 LLKLPTAFGILIIY-LTTSYLRRIMLCVARLCYYVSQNYFLTLLQIQMMFL 525
           L+ L  A GI+II+ L   +LR+  +     C Y+++ +F  L    M ++
Sbjct: 334 LISLAIAGGIVIIFVLIIKFLRQTRIIAKSSCDYITRYWFRVLFNACMRWV 384


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 644 LIIYLTTSYLRRIMLCVARLCYYVSQNYFL 555
           L+I + T Y RRI+ C A LC  +   Y+L
Sbjct: 39  LLIVVITLY-RRIVECCASLCSLIFSKYYL 67


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 482  LILTHWRWSILKIIKFTLGTLLR 414
            L+  H RWS +++ K+ LGT  +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 274 HQFPERCVFLYFELYNCI 221
           H+FP  C+F  F  YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 241  FELYNCIILT*YFQINVFVFSLLFI 167
            +E+YN +I + Y  INV  F+ LFI
Sbjct: 1307 YEIYNALIRSIYRFINVEAFNSLFI 1331


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 274 HQFPERCVFLYFELYNCI 221
           H+FP  C+F  F  YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 740 LLLQHYNSLAFVDVSTKHITMELLKLPTAFGIL 642
           LLL   NSL+ +D+ST +I+   L +P +   L
Sbjct: 401 LLLSEDNSLSLLDISTGNISNMSLSIPPSLCFL 433


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
 Frame = +2

Query: 65  CHLRVRL*KQIPNQFVN-SQFCINS----F*NHINLKM---ADEKKGENEHINLKVLGQD 220
           CH R  L  QI N++   S++  +     F   IN+K    A + K ++ HI +   G+ 
Sbjct: 126 CHTR-ELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRL 184

Query: 221 NAIVQFKIKKHTPLRKLMNAYCDR 292
           NA+V+ KI K   ++  +   CD+
Sbjct: 185 NALVREKILKVNSVKHFVLDECDK 208


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 27  NPLRFDYHAIAQAVIYAFVCENRYQISLSIHSF 125
           +P+R+      Q  ++A +C NR  +++  H F
Sbjct: 119 DPIRYQSFIALQDKLHANLCRNRTLVAIGTHDF 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,329,536
Number of Sequences: 5004
Number of extensions: 66539
Number of successful extensions: 140
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)