Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_I17
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    33   0.071
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    32   0.093
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    29   0.87 
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    28   1.5  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    28   2.0  
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo...    27   4.6  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    26   8.1  

>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 32.7 bits (71), Expect = 0.071
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 277 WNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEE 423
           W  KK S  NL E G  S   K   +PN +     RA    +++D DEE
Sbjct: 222 WFMKKESEENLAEAGSASPMYKLKTVPNARPVTGPRASGSDDELDYDEE 270


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 32.3 bits (70), Expect = 0.093
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 406 IDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRK 507
           ID +E VET+   P KKE  +K EK+ +  +K++
Sbjct: 445 IDVEETVETISEKPSKKEKKDKKEKKKEKSKKKR 478


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 520 KGQVEFITYLLDKYGNDYKAMERDKKNYYQETWKQLRSKIKTFMGIPAQYS 672
           K   +F+ Y+ +   ND KAM  ++KNY+ +  K L S+ + F+   A  S
Sbjct: 365 KPSFDFLKYITEST-NDIKAMTGEQKNYFLQIKKFLSSR-EPFIDFSANIS 413


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 647 SWVYLHSIVYTCRKEECW 700
           +W Y HS+V+     ECW
Sbjct: 622 TWYYRHSLVFVSSSNECW 639


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +1

Query: 334 PNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAK 489
           P   +K  +     +++    V ++DS+E+ E+     P++E  + +EK  K
Sbjct: 36  PATVLKYLHEDSIYVEQPMNTVEEVDSEEDEESAPAYYPEREAIQLIEKAIK 87


>SPBC1539.10 |||ribosome biogenesis protein Nop16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 229 NKKVQGNVQCS-IVKEAWNNKKTSARNLREMGLVSDPN 339
           NKK +  +  + ++++ W+   T  +N   +GL++ PN
Sbjct: 23  NKKAKAKIYGNFVIQQNWDKHATLRQNYARLGLLATPN 60


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = +1

Query: 226 GNKKVQGNVQCSIVKEAWNNKKTSARN--LREMGLVSDPNKTI-KIPNFKQTQIQRAKQM 396
           G KK +G+     ++ A  NK     N   +E  + +D   T    P+ +   ++ A + 
Sbjct: 323 GKKKSKGSALMVDIEAADINKTEENINNQFQEASVTADNMNTWDNTPSVEN--VESANEN 380

Query: 397 VNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAP 495
           VN  ++DE+++  ++   +   A ++EK A+ P
Sbjct: 381 VNNHNADEQMDEKIKSLVEGNSAYEIEKGAQEP 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,863,900
Number of Sequences: 5004
Number of extensions: 51120
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)