Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_I16
(885 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0005 + 11568545-11569119,11569179-11569191 34 0.17
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.1
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609... 30 2.8
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 3.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 5.0
06_01_1176 + 10112257-10113126 29 5.0
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 5.0
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 29 5.0
02_04_0408 + 22655454-22655520,22656055-22656356 29 6.6
02_04_0382 - 22501041-22501279,22501717-22501810 29 6.6
01_06_0598 - 30511043-30511227,30511360-30511606 29 6.6
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 28 8.7
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 33.9 bits (74), Expect = 0.17
Identities = 27/92 (29%), Positives = 31/92 (33%)
Frame = +2
Query: 386 SGXXGGGGXXXPXXKTPPPRGXGGXXFGXXXXXXXXXXXGPXXXGGGXXXPPPXGXXXGS 565
SG GGGG +PPP GG G GGG PPP G G
Sbjct: 77 SGGGGGGGGGTVMYTSPPPPYSGG-------------GGGSSTGGGGIYYPPPTGGGGG- 122
Query: 566 PKXGGXPXKKPXNQXXTKXPKPEXGPFXXFFP 661
GG ++ P PF +FP
Sbjct: 123 ---GGGGWQQGGGGGGAYPTPPPPNPFLPYFP 151
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 342 PXKKIXPPPXXXFXXPGXGGGGGXFXPXKKPPXPGG 449
P + PPP G GGGG PP GG
Sbjct: 65 PTPQCPPPPSYPSGGGGGGGGGTVMYTSPPPPYSGG 100
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/61 (36%), Positives = 22/61 (36%)
Frame = -1
Query: 579 PPXFGEPXXXPXGGGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPRGGGVFXXGKXXPPP 400
PP P P G PPP GP GP PP P GG G PPP
Sbjct: 331 PPKAAPPPPPPKG---PPPPPPAKGP---PPPPPPKGPSPPPPPPPGG---KKGGPPPPP 381
Query: 399 P 397
P
Sbjct: 382 P 382
>07_03_1140 -
24258627-24258849,24259967-24260089,24260200-24260921,
24260945-24261073,24261484-24261714
Length = 475
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/62 (30%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Frame = +3
Query: 396 GGGGGXFXPXKKPPXPGGXXXXXXXXXXXXXXXXXXAP------GXXGGXXVXPPPXGGX 557
GGGG + P + PP GG AP G GG PPP G
Sbjct: 10 GGGGSLWGPPQPPPSTGGGIPQLPAAAAAPVEGLLDAPFSSSSGGGGGGWPPPPPPLSGT 69
Query: 558 XV 563
V
Sbjct: 70 AV 71
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/66 (25%), Positives = 18/66 (27%)
Frame = -1
Query: 585 GXPPXFGEPXXXPXGGGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPRGGGVFXXGKXXP 406
G PP + P G PPP G P P P G G
Sbjct: 437 GQPPPYASYPPPPPGSSMYNPPPPAPGQATPPPYGVQYAPPPAPIPPPGTAPSTDGAQNY 496
Query: 405 PPPXXP 388
PP P
Sbjct: 497 PPGVTP 502
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 461 PXPXXPGXGGFFXXXKXPPPPPXPR 387
P P PG G F PPPPP PR
Sbjct: 651 PPPPAPGIGNKFPAP--PPPPPPPR 673
>06_01_1176 + 10112257-10113126
Length = 289
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +3
Query: 321 PXGXPXNPXKKIXPPPXXXFXXPGXGGGGGXFXPXKKPPXPGG 449
P G K+ PPP F G GGGG K GG
Sbjct: 74 PVGGGCRKPKRPAPPPSSSFTGGGGGGGGCGHRDSKSARSAGG 116
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 5.0
Identities = 33/139 (23%), Positives = 35/139 (25%), Gaps = 4/139 (2%)
Frame = +3
Query: 189 PXXPPPXGGEXXPXKXKKPGXX----GXXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKI 356
P PPP G P P G P P P +P
Sbjct: 273 PAAPPPPAGPPPPAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPA 332
Query: 357 XPPPXXXFXXPGXGGGGGXFXPXKKPPXPGGXXXXXXXXXXXXXXXXXXAPGXXGGXXVX 536
PPP P G G P PP P A G GG
Sbjct: 333 PPPPA---PSPSAAGAGSGPPP---PPPPAAPAAPRPPGPGPGPPPPPGAAGRGGG---G 383
Query: 537 PPPXGGXXVPQKXGXXPXK 593
PPP P+ G P K
Sbjct: 384 PPPPALPGGPRARGPPPFK 402
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 443 GXGGFFXXXKXPPPPPXPR 387
G GGF PPPPP PR
Sbjct: 25 GGGGFSPTAAKPPPPPSPR 43
>02_04_0408 + 22655454-22655520,22656055-22656356
Length = 122
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 576 PXFGEPXXXPXGGGXXXPPPXXXGP 502
P + P P GGG PPP GP
Sbjct: 60 PYYPGPWWWPNGGGFYPPPPFNGGP 84
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 456 PPXPRGGGVFXXGKXXPPPPXXP 388
PP P GG GK PPPP P
Sbjct: 84 PPSPYYGGGGGYGKPPPPPPCCP 106
>01_06_0598 - 30511043-30511227,30511360-30511606
Length = 143
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 342 PXKKIXPPPXXXFXXPGXGGGGGXFXPXKKPPXP 443
P + PP G GGGG P ++PP P
Sbjct: 16 PRRHALPPTLVLVADGGEYGGGGQGRPHRRPPLP 49
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Frame = +2
Query: 506 PXXXGGGXXXPPPXGXXXGSPKXGGXPXKKPXNQXXTKXPK-PEXGP 643
P G PP G PK G P KP PK P+ GP
Sbjct: 170 PKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGP 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.148 0.502
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,789,679
Number of Sequences: 37544
Number of extensions: 353532
Number of successful extensions: 1835
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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