Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_I16
(885 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 36 0.029
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 36 0.029
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 36 0.029
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 32 0.63
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 31 0.83
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 31 0.83
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 31 0.83
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 31 0.83
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.1
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 31 1.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.1
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 31 1.1
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 31 1.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.1
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 30 1.9
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 30 1.9
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 30 1.9
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 30 1.9
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 3.3
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 29 3.3
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL117203-6|CAB60419.1| 234|Caenorhabditis elegans Hypothetical ... 29 4.4
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.8
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 5.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.8
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 5.8
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 5.8
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 5.8
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 28 7.7
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 28 7.7
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 28 7.7
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 28 7.7
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Frame = -1
Query: 585 GXPPXFGEPXXXPX--GGGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPRGGGVFXXGKX 412
G PP P P G G PPP P P PP P GG +
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA 294
Query: 411 XPPPPXXP 388
PPP P
Sbjct: 295 GSPPPPPP 302
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/62 (33%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Frame = -1
Query: 579 PPXFGEPXXXPXGGGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPR-GGGVFXXGKXXPP 403
PP G P P GG PPP G P P P+ GG G PP
Sbjct: 274 PPPTGSPPPPPAGGS---PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 330
Query: 402 PP 397
PP
Sbjct: 331 PP 332
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = -1
Query: 567 GEPXXXPXGGGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPRGGGVFXXGKXXPPPP 397
G+ P G PPP P PP PR G PPPP
Sbjct: 227 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 283
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Frame = -1
Query: 585 GXPPXFGEPXXXPX--GGGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPRGGGVFXXGKX 412
G PP P P G G PPP P P PP P GG +
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA 315
Query: 411 XPPPPXXP 388
PPP P
Sbjct: 316 GSPPPPPP 323
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/62 (33%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Frame = -1
Query: 579 PPXFGEPXXXPXGGGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPR-GGGVFXXGKXXPP 403
PP G P P GG PPP G P P P+ GG G PP
Sbjct: 295 PPPTGSPPPPPAGGS---PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 351
Query: 402 PP 397
PP
Sbjct: 352 PP 353
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = -1
Query: 567 GEPXXXPXGGGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPRGGGVFXXGKXXPPPP 397
G+ P G PPP P PP PR G PPPP
Sbjct: 248 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 304
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Frame = -1
Query: 585 GXPPXFGEPXXXPX--GGGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPRGGGVFXXGKX 412
G PP P P G G PPP P P PP P GG +
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA 300
Query: 411 XPPPPXXP 388
PPP P
Sbjct: 301 GSPPPPPP 308
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/62 (33%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Frame = -1
Query: 579 PPXFGEPXXXPXGGGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPR-GGGVFXXGKXXPP 403
PP G P P GG PPP G P P P+ GG G PP
Sbjct: 280 PPPTGSPPPPPAGGS---PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 336
Query: 402 PP 397
PP
Sbjct: 337 PP 338
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = -1
Query: 567 GEPXXXPXGGGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPRGGGVFXXGKXXPPPP 397
G+ P G PPP P PP PR G PPPP
Sbjct: 233 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 289
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.9 bits (69), Expect = 0.63
Identities = 21/80 (26%), Positives = 22/80 (27%)
Frame = -1
Query: 579 PPXFGEPXXXPXGGGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPRGGGVFXXGKXXPPP 400
P FG P GG PPP G PP P G G + PP
Sbjct: 394 PSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPP 453
Query: 399 PXXPXXKXXXXXXGKFFXXG 340
P G F G
Sbjct: 454 VGAPPPGAAGAPGGNPFARG 473
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/76 (28%), Positives = 26/76 (34%)
Frame = +2
Query: 434 PPPRGXGGXXFGXXXXXXXXXXXGPXXXGGGXXXPPPXGXXXGSPKXGGXPXKKPXNQXX 613
PPP+G FG GP G PPP SP+ G P +
Sbjct: 321 PPPQGAPQQGFGAPPQGPPQG--GPPQ--GSFGAPPPQQFHAPSPQSFGGPPPPVSSAPG 376
Query: 614 TKXPKPEXGPFXXFFP 661
P P+ GP F P
Sbjct: 377 NFAPPPQSGPPGAFAP 392
Score = 28.3 bits (60), Expect = 7.7
Identities = 31/135 (22%), Positives = 37/135 (27%), Gaps = 4/135 (2%)
Frame = +3
Query: 186 PPXXPPPXGGEXXPXKXKKPGXXGXXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIXPP 365
PP PP G P + ++ P+ + + P G P P P
Sbjct: 297 PPSGPPSEYGGYAPPQQQQQQFGAPPPQGAPQQGFGAPPQGP---PQGGP--PQGSFGAP 351
Query: 366 PXXXFXXPGXGGGGGXFXPXKKPPX----PGGXXXXXXXXXXXXXXXXXXAPGXXGGXXV 533
P F P GG P P P PG GG
Sbjct: 352 PPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYG- 410
Query: 534 XPPPXGGXXVPQKXG 578
PPP GG P G
Sbjct: 411 -PPPPGGPGAPGSYG 424
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 31.5 bits (68), Expect = 0.83
Identities = 22/89 (24%), Positives = 27/89 (30%), Gaps = 2/89 (2%)
Frame = +3
Query: 186 PPXXPPPXGGEXXPXKXKKPGXXGXXPKKXXXKKTXXXE--KXXXXXPXGXPXNPXKKIX 359
PP P P G P + PG G + + + P G P P
Sbjct: 168 PPGPPGPAGDAGSPGQAGAPGNPGRPGQSGQRSRGLPGPSGRPGPQGPPGAPGQPGSGST 227
Query: 360 PPPXXXFXXPGXGGGGGXFXPXKKPPXPG 446
P P PG G G +P PG
Sbjct: 228 PGPAGPPGPPGPNGQPGHPGQDGQPGAPG 256
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = -1
Query: 576 PXFGEPXXXPXGGGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPRGGGVFXXGKXXPPPP 397
P +G P P PPP P PP P G G PPPP
Sbjct: 596 PNYGTPENRPHAVPPPPPPPPPQS-FGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPP 654
Query: 396 XXP 388
P
Sbjct: 655 PPP 657
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = -1
Query: 576 PXFGEPXXXPXGGGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPRGGGVFXXGKXXPPPP 397
P +G P P PPP P PP P G G PPPP
Sbjct: 422 PNYGTPENRPHAVPPPPPPPPPQS-FGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPP 480
Query: 396 XXP 388
P
Sbjct: 481 PPP 483
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 31.5 bits (68), Expect = 0.83
Identities = 22/69 (31%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Frame = -1
Query: 597 GFXXGXPPXFGEPXXXPXG--GGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPRGGGVFX 424
G G PP F P G G PPP GP PP P F
Sbjct: 693 GLPPGVPPMFNLNAPPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPPMFQQGFN 752
Query: 423 XGKXXPPPP 397
G PPPP
Sbjct: 753 AG--APPPP 759
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 26/90 (28%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Frame = +3
Query: 189 PXXPPPXGGEXXPXKXKKPGXXG--XXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIXP 362
P P P G P K KPG G P K + G P P P
Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 363 P-PXXXFXXPGXGGGGGXFXPXKKPPXPGG 449
P P PG G P PP P G
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGP-AGPPGPAG 192
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 26/90 (28%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Frame = +3
Query: 189 PXXPPPXGGEXXPXKXKKPGXXG--XXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIXP 362
P P P G P K KPG G P K + G P P P
Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 363 P-PXXXFXXPGXGGGGGXFXPXKKPPXPGG 449
P P PG G P PP P G
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGP-AGPPGPAG 192
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 448 PPGXGGFXXGXXXPPPPPXPGXXKXXXGG 362
PP GG PPPPP PG GG
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGG 757
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Frame = -3
Query: 553 PPXGGGXTXXPPXX---PGAXXXXXXXXXXXXXXXXPXPPGXGGFXXGXXXPPPPPXPG 386
PP GG PP P + P PP GGF G PPPPP PG
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG---PPPPPPPG 791
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/70 (32%), Positives = 23/70 (32%)
Frame = -3
Query: 586 GXXPXFWGTXXPPXGGGXTXXPPXXPGAXXXXXXXXXXXXXXXXPXPPGXGGFXXGXXXP 407
G P G PP GG PP G P PP G G P
Sbjct: 718 GLPPITGGPPPPPPPGGL---PPITGGPPPPPPPGGLPPISGGPPPPPPPPG---GCPPP 771
Query: 406 PPPPXPGXXK 377
PPPP PG K
Sbjct: 772 PPPPPPGGFK 781
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 448 PPGXGGFXXGXXXPPPPPXPGXXKXXXGG 362
PP GG PPPPP PG GG
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGG 757
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Frame = -3
Query: 553 PPXGGGXTXXPPXX---PGAXXXXXXXXXXXXXXXXPXPPGXGGFXXGXXXPPPPPXPG 386
PP GG PP P + P PP GGF G PPPPP PG
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG---PPPPPPPG 791
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/70 (32%), Positives = 23/70 (32%)
Frame = -3
Query: 586 GXXPXFWGTXXPPXGGGXTXXPPXXPGAXXXXXXXXXXXXXXXXPXPPGXGGFXXGXXXP 407
G P G PP GG PP G P PP G G P
Sbjct: 718 GLPPITGGPPPPPPPGGL---PPITGGPPPPPPPGGLPPISGGPPPPPPPPG---GCPPP 771
Query: 406 PPPPXPGXXK 377
PPPP PG K
Sbjct: 772 PPPPPPGGFK 781
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 26/90 (28%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Frame = +3
Query: 189 PXXPPPXGGEXXPXKXKKPGXXG--XXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIXP 362
P P P G P K KPG G P K + G P P P
Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 363 P-PXXXFXXPGXGGGGGXFXPXKKPPXPGG 449
P P PG G P PP P G
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGP-AGPPGPAG 192
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 26/90 (28%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Frame = +3
Query: 189 PXXPPPXGGEXXPXKXKKPGXXG--XXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIXP 362
P P P G P K KPG G P K + G P P P
Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 363 P-PXXXFXXPGXGGGGGXFXPXKKPPXPGG 449
P P PG G P PP P G
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGP-AGPPGPAG 192
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 448 PPGXGGFXXGXXXPPPPPXPGXXKXXXGG 362
PP GG PPPPP PG GG
Sbjct: 312 PPPPGGLPPITGGPPPPPPPGGLPPISGG 340
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Frame = -3
Query: 553 PPXGGGXTXXPPXX---PGAXXXXXXXXXXXXXXXXPXPPGXGGFXXGXXXPPPPPXPG 386
PP GG PP P + P PP GGF G PPPPP PG
Sbjct: 319 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG---PPPPPPPG 374
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/70 (32%), Positives = 23/70 (32%)
Frame = -3
Query: 586 GXXPXFWGTXXPPXGGGXTXXPPXXPGAXXXXXXXXXXXXXXXXPXPPGXGGFXXGXXXP 407
G P G PP GG PP G P PP G G P
Sbjct: 301 GLPPITGGPPPPPPPGGL---PPITGGPPPPPPPGGLPPISGGPPPPPPPPG---GCPPP 354
Query: 406 PPPPXPGXXK 377
PPPP PG K
Sbjct: 355 PPPPPPGGFK 364
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = +3
Query: 360 PPPXXXFXXPGXGGGGGXFXPXKKP--PXPGG 449
PPP PG GGGG P P P PGG
Sbjct: 790 PPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGG 821
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/81 (27%), Positives = 24/81 (29%)
Frame = +2
Query: 398 GGGGXXXPXXKTPPPRGXGGXXFGXXXXXXXXXXXGPXXXGGGXXXPPPXGXXXGSPKXG 577
GGGG PPP G G P GGG PPP G G
Sbjct: 22 GGGGGCGCAPPPPPPSPCGCGGGGGLALPQLPPLSLPSLGGGGGCCPPPAPACGGG--CG 79
Query: 578 GXPXKKPXNQXXTKXPKPEXG 640
G P + P+ G
Sbjct: 80 GGVAPAPIGGGYAQAPQAPIG 100
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = +3
Query: 378 FXXPGXGGGGGXFXPXKKPPXPGGXXXXXXXXXXXXXXXXXXAPGXXGGXXVXPPPXGG 554
F P GGGG P PP P G + G GG P P G
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPSPCGCGGGGGLALPQLPPLSLPSLGGGGGCCPPPAPACG 75
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = +3
Query: 360 PPPXXXFXXPGXGGGGGXFXPXKKP--PXPGG 449
PPP PG GGGG P P P PGG
Sbjct: 790 PPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGG 821
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/88 (25%), Positives = 27/88 (30%)
Frame = +3
Query: 186 PPXXPPPXGGEXXPXKXKKPGXXGXXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIXPP 365
PP G + P PG G + ++ P G P P K+
Sbjct: 142 PPGPSGAPGTDGNPGNDGSPGNPGTPGQDAVGDESPTAADFCFDCPTGPPGPPGKQGPKG 201
Query: 366 PXXXFXXPGXGGGGGXFXPXKKPPXPGG 449
P PG GG P PP P G
Sbjct: 202 PNGEPGAPGTPGGNALPGP-PGPPGPQG 228
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -3
Query: 442 GXGGFXXGXXXPPPPPXPGXXKXXXGGG 359
G GG G PPPPP G GGG
Sbjct: 44 GGGGCGGGCAPPPPPPACGGGCGGGGGG 71
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -3
Query: 442 GXGGFXXGXXXPPPPPXPGXXKXXXGGG 359
G GG G PPPPP G GGG
Sbjct: 101 GGGGCGGGCAPPPPPPACGGGCGGGGGG 128
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/88 (27%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Frame = +3
Query: 198 PPPXGGEXXPXKXKKPGXXGXXPKKXXXKKTXXXEKXXXXX----PXGXPXNPXKKIXPP 365
P G + P KPG G + K P G P K P
Sbjct: 103 PGSPGEDGAPGDDGKPGNDGEPGRDSTDKDEKPTAADFCFDCPVGPAGPAGGPGPKGPPG 162
Query: 366 PXXXFXXPGXGGGGGXFXPXKKPPXPGG 449
P PG G GG + PP PGG
Sbjct: 163 PPGGHGEPGPAGRGG----PRGPPGPGG 186
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/81 (29%), Positives = 24/81 (29%)
Frame = -1
Query: 597 GFXXGXPPXFGEPXXXPXGGGXXXPPPXXXGPXXXXXXXXXXGPKXXPPXPRGGGVFXXG 418
GF P G P P G PPP G P PP P G GV
Sbjct: 72 GFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPP--PPPPPSGLGV---- 125
Query: 417 KXXPPPPXXPXXKXXXXXXGK 355
PP P P GK
Sbjct: 126 APQPPRPKTPVNPALAKLGGK 146
>AL117203-6|CAB60419.1| 234|Caenorhabditis elegans Hypothetical
protein Y48C3A.9 protein.
Length = 234
Score = 29.1 bits (62), Expect = 4.4
Identities = 23/79 (29%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Frame = +3
Query: 327 GXPXNPXKKIXPPPXXXFXXPGXGGG-GGXFXPXKKPP---XPGGXXXXXXXXXXXXXXX 494
G P PPP G G GG F P + PP PGG
Sbjct: 108 GMPPGMNGHFAPPPMGMEMMGGHPGAFGGRFAPGRMPPGAMAPGGMPPGAFPMFPPDPRL 167
Query: 495 XXXAPGXXGGXXVXPPPXG 551
AP G + PPP G
Sbjct: 168 QRMAPNQ--GMRMPPPPVG 184
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/87 (27%), Positives = 28/87 (32%)
Frame = +3
Query: 186 PPXXPPPXGGEXXPXKXKKPGXXGXXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIXPP 365
PP P P G P + PG G P K + P G P P +
Sbjct: 170 PPGPPGPAGSAGSPGQAGAPGNPG-SPGKSGQRGRGLPGPSGAPGPQGPPGAPGQ----- 223
Query: 366 PXXXFXXPGXGGGGGXFXPXKKPPXPG 446
P PG G G P +P PG
Sbjct: 224 PGSG-NAPGPAGPPGPAGPNGQPGHPG 249
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/88 (26%), Positives = 24/88 (27%)
Frame = +3
Query: 186 PPXXPPPXGGEXXPXKXKKPGXXGXXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIXPP 365
P P G P PG G P T K P G P P P
Sbjct: 109 PAGAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPG 168
Query: 366 PXXXFXXPGXGGGGGXFXPXKKPPXPGG 449
PG G P + PP P G
Sbjct: 169 EAGTPGRPGTDAAPGSPGP-RGPPGPAG 195
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/93 (26%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Frame = +3
Query: 186 PPXXPPPXGGEXXPXKXKKPGXXGXXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIX-- 359
PP PPP P P G P+ + P P P
Sbjct: 261 PPVPPPPPS--VTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 318
Query: 360 PPPXXXFXXPGXGG-----GGGXFXPXKKPPXP 443
PPP F PG GG G P PP P
Sbjct: 319 PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 351
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/88 (26%), Positives = 24/88 (27%)
Frame = +3
Query: 186 PPXXPPPXGGEXXPXKXKKPGXXGXXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIXPP 365
P P G P PG G P T K P G P P P
Sbjct: 104 PAGAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPG 163
Query: 366 PXXXFXXPGXGGGGGXFXPXKKPPXPGG 449
PG G P + PP P G
Sbjct: 164 EAGTPGRPGTDAAPGSPGP-RGPPGPAG 190
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/93 (26%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Frame = +3
Query: 186 PPXXPPPXGGEXXPXKXKKPGXXGXXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIX-- 359
PP PPP P P G P+ + P P P
Sbjct: 271 PPVPPPPPS--VTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 328
Query: 360 PPPXXXFXXPGXGG-----GGGXFXPXKKPPXP 443
PPP F PG GG G P PP P
Sbjct: 329 PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 361
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 585 GXPPXFGEPXXXPXGGGXXXPPPXXXGP 502
G PP G P GG PPP GP
Sbjct: 181 GGPPGHGGQGGPPGHGGMGGPPPGQGGP 208
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 585 GXPPXFGEPXXXPXGGGXXXPPPXXXGP 502
G PP G P GG PPP GP
Sbjct: 461 GGPPGHGGQGGPPGHGGMGGPPPGQGGP 488
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/88 (26%), Positives = 24/88 (27%)
Frame = +3
Query: 186 PPXXPPPXGGEXXPXKXKKPGXXGXXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIXPP 365
P P G P PG G P T K P G P P P
Sbjct: 104 PAGAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPG 163
Query: 366 PXXXFXXPGXGGGGGXFXPXKKPPXPGG 449
PG G P + PP P G
Sbjct: 164 EAGTPGRPGTDAAPGSPGP-RGPPGPAG 190
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/88 (23%), Positives = 26/88 (29%)
Frame = +3
Query: 186 PPXXPPPXGGEXXPXKXKKPGXXGXXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIXPP 365
P P P G +PG G + + ++ P G P P
Sbjct: 92 PAGPPGPPGASGDKGHDGQPGQAGKPGQPGVAGPSHHQKQECIKCPQGLPGPAGAPGQPG 151
Query: 366 PXXXFXXPGXGGGGGXFXPXKKPPXPGG 449
P PG GG P PP P G
Sbjct: 152 PKGPNGNPGAPAQGGGQGP-PGPPGPAG 178
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/87 (25%), Positives = 26/87 (29%)
Frame = +3
Query: 186 PPXXPPPXGGEXXPXKXKKPGXXGXXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIXPP 365
PP P P G P + PG G K + P G P + P
Sbjct: 170 PPGPPGPAGSAGSPGQAGAPGNPGSPGKSGQRGR-------GLPGPSGAPGSQGPPGAPG 222
Query: 366 PXXXFXXPGXGGGGGXFXPXKKPPXPG 446
PG G G P +P PG
Sbjct: 223 QPGSGNAPGPAGPPGPAGPNGQPGHPG 249
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 28.3 bits (60), Expect = 7.7
Identities = 32/139 (23%), Positives = 34/139 (24%), Gaps = 1/139 (0%)
Frame = +3
Query: 174 KKKXPPXXPPPXGGEXXPXKXKKPGXXGXXPKKXXXKKT-XXXEKXXXXXPXGXPXNPXK 350
K PP P P G P PG G T + P G P
Sbjct: 98 KPVCPPGPPGPPGEPGQPGSAGPPGPPGEDNTATFAPITCPPKDPSCVKCPEGPAGPPGP 157
Query: 351 KIXPPPXXXFXXPGXGGGGGXFXPXKKPPXPGGXXXXXXXXXXXXXXXXXXAPGXXGGXX 530
+ P PG G G PP P G APG G
Sbjct: 158 EGPAGPAGSDGQPGAPGDAG----KDGPPGPPGPDGDSGPNGEAGPNGEPGAPGKDGEKG 213
Query: 531 VXPPPXGGXXVPQKXGXXP 587
P G P G P
Sbjct: 214 KGEPGPAGPPGPPGPGGPP 232
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/87 (25%), Positives = 23/87 (26%)
Frame = +3
Query: 186 PPXXPPPXGGEXXPXKXKKPGXXGXXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIXPP 365
P P G P +PG G P T K P G P P P
Sbjct: 111 PAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPG 170
Query: 366 PXXXFXXPGXGGGGGXFXPXKKPPXPG 446
PG G P P PG
Sbjct: 171 EAGTPGRPGTDATPGLPGPRGPPGPPG 197
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.3 bits (60), Expect = 7.7
Identities = 26/92 (28%), Positives = 27/92 (29%), Gaps = 4/92 (4%)
Frame = +3
Query: 186 PPXXPPPXGGEXXPXKXKKPGXXGXXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIXPP 365
PP P G P G G PK+ T K P G P
Sbjct: 99 PPGTPGSAGRPGKPGAPGLNGNPGRPPKEPCEPLTPPPCKPCPEGPPGPAGPPGPDGNKG 158
Query: 366 PXXXFXXPGXGGGGGXFXPXKK----PPXPGG 449
P PG G G P K PP PGG
Sbjct: 159 PLGPPGPPGPEGPNG--EPGNKGPAGPPGPGG 188
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/87 (25%), Positives = 23/87 (26%)
Frame = +3
Query: 186 PPXXPPPXGGEXXPXKXKKPGXXGXXPKKXXXKKTXXXEKXXXXXPXGXPXNPXKKIXPP 365
P P G P +PG G P T K P G P P P
Sbjct: 111 PAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPG 170
Query: 366 PXXXFXXPGXGGGGGXFXPXKKPPXPG 446
PG G P P PG
Sbjct: 171 EAGTPGRPGTDATPGLPGPRGPPGPPG 197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.148 0.502
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,341,902
Number of Sequences: 27780
Number of extensions: 232518
Number of successful extensions: 1409
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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