Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_I15
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0359 + 3152483-3152857,3154493-3154855,3155133-3155211,315... 66 5e-11
10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325... 63 3e-10
12_01_1055 - 10861665-10861829,10862827-10863171,10864374-108646... 62 4e-10
03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919... 42 5e-04
07_03_0750 - 21226896-21227011,21227116-21227370,21227469-212287... 36 0.043
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 31 1.6
09_04_0194 + 15504780-15506114 30 2.1
05_05_0162 + 22838907-22839070,22839180-22840063,22841164-22841228 29 3.7
12_02_0759 - 22882435-22882731 29 4.9
07_03_1367 + 26072270-26072374,26074047-26074724 29 4.9
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 29 4.9
11_08_0098 - 28334865-28336114,28336228-28336357 29 6.5
11_04_0251 - 15348685-15349257,15349295-15349381 29 6.5
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193 29 6.5
06_01_0801 - 5993726-5994160,5994811-5994969,5995071-5995211,599... 28 8.6
>08_01_0359 +
3152483-3152857,3154493-3154855,3155133-3155211,
3155473-3155879,3156342-3156497,3156728-3156895,
3156991-3157131,3157739-3157966,3158063-3158176,
3158293-3158448
Length = 728
Score = 65.7 bits (153), Expect = 5e-11
Identities = 30/64 (46%), Positives = 49/64 (76%), Gaps = 2/64 (3%)
Frame = +3
Query: 570 RRTRVPD--KPNYPLSLWSIMKNCIGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQ 743
RR+++P+ + +SLWSI+K+ +GK+L+++ +PV F+EPLS LQ+ ED EYS +LDQ
Sbjct: 342 RRSKLPEPTEKERGISLWSIIKDSVGKDLTRVCLPVYFNEPLSSLQKGFEDLEYSHLLDQ 401
Query: 744 AAKF 755
A ++
Sbjct: 402 AYQY 405
>10_08_0877 +
21230447-21230815,21231855-21232208,21232417-21232504,
21232844-21233268,21233477-21233632,21233849-21234016,
21234170-21234310,21234393-21234629,21234710-21234823,
21235096-21235272
Length = 742
Score = 62.9 bits (146), Expect = 3e-10
Identities = 27/58 (46%), Positives = 45/58 (77%)
Frame = +3
Query: 582 VPDKPNYPLSLWSIMKNCIGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAAKF 755
VP + +SLWS++K+ +GK+L+++ +PV F+EPLS LQ+ ED EYS++LD+A ++
Sbjct: 352 VPIEKEKGVSLWSMIKDNVGKDLTRVCLPVYFNEPLSSLQKCFEDLEYSNLLDRAYEY 409
>12_01_1055 -
10861665-10861829,10862827-10863171,10864374-10864682,
10864813-10864968,10865669-10866117,10869275-10869359,
10869944-10870300,10870672-10871076
Length = 756
Score = 62.5 bits (145), Expect = 4e-10
Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Frame = +3
Query: 570 RRTRVPD--KPNYPLSLWSIMKNCIGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQ 743
RR ++P+ + P+ LWSI+K IGK+LS + +PV F+EPLS LQ+ ED EYS ++D
Sbjct: 366 RRDKLPEPKEKENPVGLWSIIKENIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDH 425
Query: 744 AAKF 755
A ++
Sbjct: 426 ALQW 429
>03_02_0528 +
9189215-9189330,9190111-9190204,9190654-9190743,
9191601-9191717,9192187-9192259,9192335-9192453,
9192569-9192690,9192777-9192953,9193189-9193333,
9193458-9193636,9193742-9193991
Length = 493
Score = 42.3 bits (95), Expect = 5e-04
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +3
Query: 609 SLWSIMKNCIGKEL-SKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAAKFDD 761
S W +M IG ++ S + +PV EP++MLQ++ E EY +LD+A + +D
Sbjct: 104 SYWKMMHKYIGADVTSLVTLPVIIFEPMTMLQKMAELMEYCELLDKADECED 155
>07_03_0750 -
21226896-21227011,21227116-21227370,21227469-21228785,
21228918-21228984
Length = 584
Score = 35.9 bits (79), Expect = 0.043
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 658 IFDSSLPIQFFMMDQRLSG*LGLSGTRVRRGRPSTQ-PAACDTCG 527
+FD+ L +F +D G + +S + RRGRPS + P C CG
Sbjct: 241 LFDAQLDAVYFAIDHVSGGSVRVSMAQARRGRPSPRIPVKCSECG 285
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 832 CLSGTRGRVRXDCEXGDVGELLRG 761
C SG RGRV C+ G VG L RG
Sbjct: 29 CCSGGRGRVAVGCDDGTVGLLDRG 52
>09_04_0194 + 15504780-15506114
Length = 444
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -1
Query: 577 VRRGRPSTQPAACDTCGQTTMSVSL-AGSDGVVLPSAPPIALSAR 446
VR+G +T PA TCG T+++ L AG+ G+ S +AL A+
Sbjct: 167 VRQGPLATAPAFLFTCGPTSLTQGLAAGAAGMASLSRARLALPAQ 211
>05_05_0162 + 22838907-22839070,22839180-22840063,22841164-22841228
Length = 370
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +2
Query: 443 GASGERDGRRRRKHHTVASGQR 508
G SGE GR RR H TVAS R
Sbjct: 8 GLSGEVSGRLRRSHSTVASPSR 29
>12_02_0759 - 22882435-22882731
Length = 98
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 452 GERDGRRRRKHHTVASGQRHR 514
G R+GR +HH V GQR R
Sbjct: 36 GAREGRTHERHHLVERGQRRR 56
>07_03_1367 + 26072270-26072374,26074047-26074724
Length = 260
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 321 SYHPCWLRCPPPLRQRIHGLHPQFRCL 241
S H C ++ PPP IHGL P + L
Sbjct: 42 STHKCLVKPPPPSHFTIHGLWPSYNKL 68
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 622 MDQRLSG*LGLS--GTRVRRGRPSTQPAACDTCGQTTMSVSLAGSDGVVLPS 473
+DQ+ G LGL G+ RGRP + C T S + A +DGV+L S
Sbjct: 687 IDQQTRGNLGLGLPGSMANRGRPIAR-TKCVKFAPTGRSFAAATTDGVLLYS 737
>11_08_0098 - 28334865-28336114,28336228-28336357
Length = 459
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = -2
Query: 297 CPPPLRQRIHGLHPQF---RCLELSRYHRCQFFL 205
CP LR R+ GLHP RC S Y R +L
Sbjct: 99 CPACLRDRLAGLHPPSDLRRCKSFSYYARSSSYL 132
>11_04_0251 - 15348685-15349257,15349295-15349381
Length = 219
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 450 AESAMGGADGSTTPSLPAKDTDIVVWPHVSQAAGCVDGRPRRTRV 584
AE A GG + TP +D VV+P AG D P R RV
Sbjct: 55 AEGAAGGGAVTATPLFTGEDASSVVFPRNGGDAGEEDA-PARPRV 98
>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
Length = 476
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -1
Query: 568 GRPSTQPAACDTCGQTTMSVSLAGSDGVVLPSAPPIALSARSLSSTNITCC 416
G PS P A T + SL G+ PSA +ALS R+L +TN C
Sbjct: 36 GVPSDPPPAPPTAVKKKKKRSLPGTPD---PSAEVVALSPRTLLATNRFVC 83
>06_01_0801 -
5993726-5994160,5994811-5994969,5995071-5995211,
5995999-5996097,5996180-5996542,5996929-5997150,
5997257-5997448,5997997-5998056,5998162-5998378,
5998471-5998523,5999013-5999084,5999928-6000113,
6000986-6001132,6002902-6003075,6003149-6003300,
6004269-6004360,6004549-6004710,6004875-6005053,
6005173-6005304,6005454-6005507,6006082-6006191,
6006317-6006487,6006577-6006663,6008488-6008611,
6009355-6009564
Length = 1330
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -1
Query: 568 GRPSTQPAACDTCGQTTMSVSLAGSDGVVLPSAPPIALSARSLSSTNITC 419
G P P A T M AG+DG V+P A + A S+ C
Sbjct: 27 GMPLAPPTAMPRAPPTAMVARAAGADGAVVPVADRLDQLADSVQLAREDC 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,952,225
Number of Sequences: 37544
Number of extensions: 317446
Number of successful extensions: 1125
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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