Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_I13
(842 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 34 0.022
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 30 0.36
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 27 4.4
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 5.8
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 5.8
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 26 7.7
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 7.7
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 26 7.7
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 26 7.7
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 26 7.7
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 34.3 bits (75), Expect = 0.022
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +2
Query: 395 ILQPKLCDYIFEKAT-DQATQSSLEQWIQIILKCFSSLDHIVDSEKMAMNLINLLEITSE 571
I+QP C Y FE + D+ W II K SL + EK ++ + NL E+T
Sbjct: 493 IIQP--C-YFFESSEFDRQGPFDSPFWSAIIDKADGSLSLHILCEKSSLKIYNLEELTGS 549
Query: 572 KMVRLKIITAIPDIIGDQQHNNIAMEISRILNED 673
V +K T P + + + EI N D
Sbjct: 550 SQVAMKFKTITPSVNTSEDDSANDQEIISTPNSD 583
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 30.3 bits (65), Expect = 0.36
Identities = 21/86 (24%), Positives = 41/86 (47%)
Frame = +2
Query: 506 DHIVDSEKMAMNLINLLEITSEKMVRLKIITAIPDIIGDQQHNNIAMEISRILNEDHDLI 685
D ++ EK+ ++ +L + +I ++P QQ + +A ++ + + D I
Sbjct: 305 DALLKGEKLPYKIVTILGNAHA----MHVIISVPPSFTSQQSSELAQKVEKTVL---DAI 357
Query: 686 PAILDCLIYLNLSDEEQDHLQKQSLN 763
PA+ C++ SD Q H + Q LN
Sbjct: 358 PALSSCIVTPLSSDSNQVH-RWQHLN 382
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 347 EQPSNDSVIKILLSVPILQPKLCDYIFEKATDQATQSSLEQWIQIILK 490
E P N+ K+L S+ QP D+ F K +DQ + S+E++++ +K
Sbjct: 520 ETPLNERR-KLLYSM--FQPSTGDFTFAKHSDQKSIESIEEFLEESVK 564
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -3
Query: 429 SNI*SHSLGCKIGTLSNILMTLSLLGCSSELSFIL 325
SNI SH L G + N+L++L G SS +F+L
Sbjct: 889 SNITSHEL-LHSGLIHNLLLSLKKFGSSSLRTFLL 922
>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 122
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 594 IIFNRTIFSDVISKRLIKFIAIFSLST 514
II IFS VIS+ +I FI++F+ +T
Sbjct: 44 IIITLFIFSFVISRMIIFFISLFNKNT 70
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.8 bits (54), Expect = 7.7
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 341 SEEQPSNDSVIKI--LLSVPILQPKLCDYIFEKATDQATQSSLEQWIQIILKCFSSLDHI 514
S+EQ + +V K L VP P+L ++ + D +S + IQ++ K SSLD
Sbjct: 199 SQEQRISYTVYKNGRLRLVPFSGPELETHLAYPSEDSEVESFFNRDIQLVAKRDSSLDAP 258
Query: 515 VDSEKMAM 538
V ++ M
Sbjct: 259 VSYQRGIM 266
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 383 LSVPILQPKLCDYIFEKATDQATQSSLEQWIQIILKC 493
L VPIL PKL +Y+ + + Q + + E+ + +L C
Sbjct: 89 LPVPILLPKLINYLLARKS-QKSAAEWEEIERALLSC 124
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 31 EFLKILKLVIVSPNKRARKENKDNYLYICL 120
E ++LK+ + KR RK+++ YL +CL
Sbjct: 44 ENTEVLKVSEIEAKKRRRKKHRYIYLAVCL 73
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 455 SSLEQWIQIILKCFSSLDHIVDSEKMAMNLINL 553
SS +QW I KC S L I++S N +++
Sbjct: 103 SSSDQWKDKISKCLSLLSDILESSSKIHNQLSV 135
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 124 LLNKYIDSCPCFLFLP 77
+LN YI SCP FL P
Sbjct: 461 ILNNYIFSCPLFLVTP 476
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,864
Number of Sequences: 5004
Number of extensions: 60472
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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