Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_I13
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291...    69   5e-12
04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590...    29   6.1  
10_07_0196 + 13978647-13979142,13979242-13980542                       28   8.1  
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381...    28   8.1  

>07_01_0389 -
           2915191-2915604,2915696-2915752,2915867-2915922,
           2916053-2916113,2916243-2916365,2916505-2916537,
           2916617-2916709,2916839-2916934,2917025-2917203,
           2917344-2917530,2918051-2918184,2918311-2918518,
           2918598-2918633,2918785-2919241,2919633-2919736,
           2920489-2920569,2920646-2920697,2920837-2920876,
           2920991-2921085,2921241-2921383,2921899-2922006,
           2922120-2922221,2922302-2922348,2922425-2922554,
           2923173-2923304,2923404-2923616,2923709-2923963,
           2924053-2924799
          Length = 1460

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 40/141 (28%), Positives = 78/141 (55%), Gaps = 5/141 (3%)
 Frame = +2

Query: 365 SVIKILLSVPILQPKLCDYIFEKATDQATQ----SSLEQWI-QIILKCFSSLDHIVDSEK 529
           S+ + LLSVP LQP L   + +K  +          L   + ++I+  F  LD +VD++ 
Sbjct: 120 SLARALLSVPALQPGLLGLLLDKLPEHFDNVLDGMPLHDDVGRLIVAQFRWLDFLVDADA 179

Query: 530 MAMNLINLLEITSEKMVRLKIITAIPDIIGDQQHNNIAMEISRILNEDHDLIPAILDCLI 709
               L+ +L +   ++ + +II ++P+IIGDQ H  +   + ++L ED +++ + LD L 
Sbjct: 180 FVAKLMEVLSVAPPRLKK-EIIGSLPEIIGDQCHATVVAALEKLLQEDSEVVVSALDALS 238

Query: 710 YLNLSDEEQDHLQKQSLNILK 772
            LNLS++ Q+     +++ ++
Sbjct: 239 DLNLSEQLQEQAVTVAISCIR 259


>04_04_0827 - 28457858-28458028,28458513-28458669,28458984-28459083,
            28459204-28459231,28459321-28459396,28461276-28461355,
            28461642-28461805,28461897-28462056,28462154-28462277,
            28462901-28463941,28464141-28464259,28464512-28464823,
            28465222-28465425,28466068-28466751,28467301-28467474
          Length = 1197

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +2

Query: 455  SSLEQWIQIILKCFSSLDHIVDSEKMAMNLINLLEITSEKMVRLKIITAIPDI 613
            S L+Q +++   CF SL++I +S    +NL +L+  +    +R K    I D+
Sbjct: 1105 SILQQALEL-RSCFKSLNYISESTVKQLNLDSLINFSQVDAIRTKFEGNIKDL 1156


>10_07_0196 + 13978647-13979142,13979242-13980542
          Length = 598

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
 Frame = +2

Query: 428 EKATDQATQSSLEQWIQIILKCFSSLDHIVDSEKMAMNLINLLEITSEKMVRLKIITAIP 607
           +++     + SLE+   +I    ++L   V+ E    NL  LLE+  + M  L       
Sbjct: 284 DESNANGRRPSLERNYSVIEPSDANLADEVEGESSPENLKRLLELNKKSMSAL-----YK 338

Query: 608 DIIGDQQHNNI-AMEISRILNEDHDLIPAI-LDCLIYLNLSDEEQDH 742
           ++  ++  + I A +   ++N+ H+   A+ ++ L YL + +E+ DH
Sbjct: 339 ELEEERSASAIAASQAMAMINKLHEEKAAMQMEALQYLRMMEEQADH 385


>03_02_0800 +
           11337206-11337532,11337634-11337957,11338060-11338194,
           11338280-11338519
          Length = 341

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -2

Query: 346 FRIVLYSEYDIWEKIMFENIHILTSYLQIFK*FSNVXEGNRNDFLNSF*CF 194
           + ++ YS+  IWE + +E +  L + +Q+F     + E  +  F     CF
Sbjct: 97  YYVINYSKLRIWEFVEYERMVYLDADIQVFDNIDELFELPKGHFYAVMDCF 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,502,163
Number of Sequences: 37544
Number of extensions: 305082
Number of successful extensions: 705
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)