Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_I13
(842 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ341263-1|ABC67466.1| 1471|Homo sapiens Fanconi anemia, complem... 77 1e-13
AF340183-1|AAK15369.1| 1451|Homo sapiens Fanconi anemia compleme... 77 1e-13
AF273251-2|AAK18772.1| 1471|Homo sapiens Fanconi anemia compleme... 77 1e-13
AF273251-1|AAK18773.1| 1451|Homo sapiens Fanconi anemia compleme... 77 1e-13
AF230336-1|AAL05980.1| 1471|Homo sapiens Fanconi anemia compleme... 77 1e-13
BC013582-1|AAH13582.1| 241|Homo sapiens FANCD2 protein protein. 64 5e-10
AK022613-1|BAB14132.1| 664|Homo sapiens protein ( Homo sapiens ... 44 0.001
Y16414-1|CAA76202.1| 962|Homo sapiens Exportin(tRNA) protein. 31 4.0
BC020569-1|AAH20569.1| 962|Homo sapiens exportin, tRNA (nuclear... 31 4.0
AF039022-1|AAC39793.1| 962|Homo sapiens exportin t protein. 31 4.0
>DQ341263-1|ABC67466.1| 1471|Homo sapiens Fanconi anemia,
complementation group D2 protein.
Length = 1471
Score = 76.6 bits (180), Expect = 1e-13
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Frame = +2
Query: 242 VGELFENLQIRCQDMDIFKHYLFPNIVFRIKDNSEEQPSNDSVIKILLSVPILQPKLCDY 421
+ E L+ +D D F++ L + ++ S + S+IK+LL + ILQP +
Sbjct: 93 IEEFVSGLESYIEDEDSFRNCLLSCERLQDEEASMGASYSKSLIKLLLGIDILQPAIIKT 152
Query: 422 IFEKATDQATQSSLEQWIQI---ILKCFSSLDHIVDSEKMAMNLINLLEITSEKMVRLKI 592
+FEK + ++ I I I+ LD +VD + + ++ L+ I E + I
Sbjct: 153 LFEKLPEYFFENKNSDEINIPRLIVSQLKWLDRVVDGKDLTTKIMQLISIAPENLQH-DI 211
Query: 593 ITAIPDIIGDQQHNNIAMEISRILNEDHDLIPAILDCLIYLNL 721
IT++P+I+GD QH ++ E+S +L E+ L ILD L L L
Sbjct: 212 ITSLPEILGDSQHADVGKELSDLLIENTSLTVPILDVLSSLRL 254
>AF340183-1|AAK15369.1| 1451|Homo sapiens Fanconi anemia
complementation group D2 protein protein.
Length = 1451
Score = 76.6 bits (180), Expect = 1e-13
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Frame = +2
Query: 242 VGELFENLQIRCQDMDIFKHYLFPNIVFRIKDNSEEQPSNDSVIKILLSVPILQPKLCDY 421
+ E L+ +D D F++ L + ++ S + S+IK+LL + ILQP +
Sbjct: 93 IEEFVSGLESYIEDEDSFRNCLLSCERLQDEEASMGASYSKSLIKLLLGIDILQPAIIKT 152
Query: 422 IFEKATDQATQSSLEQWIQI---ILKCFSSLDHIVDSEKMAMNLINLLEITSEKMVRLKI 592
+FEK + ++ I I I+ LD +VD + + ++ L+ I E + I
Sbjct: 153 LFEKLPEYFFENKNSDEINIPRLIVSQLKWLDRVVDGKDLTTKIMQLISIAPENLQH-DI 211
Query: 593 ITAIPDIIGDQQHNNIAMEISRILNEDHDLIPAILDCLIYLNL 721
IT++P+I+GD QH ++ E+S +L E+ L ILD L L L
Sbjct: 212 ITSLPEILGDSQHADVGKELSDLLIENTSLTVPILDVLSSLRL 254
>AF273251-2|AAK18772.1| 1471|Homo sapiens Fanconi anemia
complementation group D2 protein, isoform 1 protein.
Length = 1471
Score = 76.6 bits (180), Expect = 1e-13
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Frame = +2
Query: 242 VGELFENLQIRCQDMDIFKHYLFPNIVFRIKDNSEEQPSNDSVIKILLSVPILQPKLCDY 421
+ E L+ +D D F++ L + ++ S + S+IK+LL + ILQP +
Sbjct: 93 IEEFVSGLESYIEDEDSFRNCLLSCERLQDEEASMGASYSKSLIKLLLGIDILQPAIIKT 152
Query: 422 IFEKATDQATQSSLEQWIQI---ILKCFSSLDHIVDSEKMAMNLINLLEITSEKMVRLKI 592
+FEK + ++ I I I+ LD +VD + + ++ L+ I E + I
Sbjct: 153 LFEKLPEYFFENKNSDEINIPRLIVSQLKWLDRVVDGKDLTTKIMQLISIAPENLQH-DI 211
Query: 593 ITAIPDIIGDQQHNNIAMEISRILNEDHDLIPAILDCLIYLNL 721
IT++P+I+GD QH ++ E+S +L E+ L ILD L L L
Sbjct: 212 ITSLPEILGDSQHADVGKELSDLLIENTSLTVPILDVLSSLRL 254
>AF273251-1|AAK18773.1| 1451|Homo sapiens Fanconi anemia
complementation group D2 protein, isoform 2 protein.
Length = 1451
Score = 76.6 bits (180), Expect = 1e-13
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Frame = +2
Query: 242 VGELFENLQIRCQDMDIFKHYLFPNIVFRIKDNSEEQPSNDSVIKILLSVPILQPKLCDY 421
+ E L+ +D D F++ L + ++ S + S+IK+LL + ILQP +
Sbjct: 93 IEEFVSGLESYIEDEDSFRNCLLSCERLQDEEASMGASYSKSLIKLLLGIDILQPAIIKT 152
Query: 422 IFEKATDQATQSSLEQWIQI---ILKCFSSLDHIVDSEKMAMNLINLLEITSEKMVRLKI 592
+FEK + ++ I I I+ LD +VD + + ++ L+ I E + I
Sbjct: 153 LFEKLPEYFFENKNSDEINIPRLIVSQLKWLDRVVDGKDLTTKIMQLISIAPENLQH-DI 211
Query: 593 ITAIPDIIGDQQHNNIAMEISRILNEDHDLIPAILDCLIYLNL 721
IT++P+I+GD QH ++ E+S +L E+ L ILD L L L
Sbjct: 212 ITSLPEILGDSQHADVGKELSDLLIENTSLTVPILDVLSSLRL 254
>AF230336-1|AAL05980.1| 1471|Homo sapiens Fanconi anemia
complementation group D2 protein protein.
Length = 1471
Score = 76.6 bits (180), Expect = 1e-13
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Frame = +2
Query: 242 VGELFENLQIRCQDMDIFKHYLFPNIVFRIKDNSEEQPSNDSVIKILLSVPILQPKLCDY 421
+ E L+ +D D F++ L + ++ S + S+IK+LL + ILQP +
Sbjct: 93 IEEFVSGLESYIEDEDSFRNCLLSCERLQDEEASMGASYSKSLIKLLLGIDILQPAIIKT 152
Query: 422 IFEKATDQATQSSLEQWIQI---ILKCFSSLDHIVDSEKMAMNLINLLEITSEKMVRLKI 592
+FEK + ++ I I I+ LD +VD + + ++ L+ I E + I
Sbjct: 153 LFEKLPEYFFENKNSDEINIPRLIVSQLKWLDRVVDGKDLTTKIMQLISIAPENLQH-DI 211
Query: 593 ITAIPDIIGDQQHNNIAMEISRILNEDHDLIPAILDCLIYLNL 721
IT++P+I+GD QH ++ E+S +L E+ L ILD L L L
Sbjct: 212 ITSLPEILGDSQHADVGKELSDLLIENTSLTVPILDVLSSLRL 254
>BC013582-1|AAH13582.1| 241|Homo sapiens FANCD2 protein protein.
Length = 241
Score = 64.5 bits (150), Expect = 5e-10
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Frame = +2
Query: 242 VGELFENLQIRCQDMDIFKHYLFPNIVFRIKDNSEEQPSNDSVIKILLSVPILQPKLCDY 421
+ E L+ +D D F++ L + ++ S + S+IK+LL + ILQP +
Sbjct: 93 IEEFVSGLESYIEDEDSFRNCLLSCERLQDEEASMGASYSKSLIKLLLGIDILQPAIIKT 152
Query: 422 IFEKATDQATQSSLEQWIQI---ILKCFSSLDHIVDSEKMAMNLINLLEITSEKMVRLKI 592
+FEK + ++ I I I+ LD +VD + + ++ L+ I E + + I
Sbjct: 153 LFEKLPEYFFENKNSDEINIPRLIVSQLKWLDRVVDGKDLTTKIMQLISIAPENL-QHDI 211
Query: 593 ITAIPDIIGDQQHNNIAMEI 652
IT++P+I+GD QH ++ E+
Sbjct: 212 ITSLPEILGDSQHADVGKEL 231
>AK022613-1|BAB14132.1| 664|Homo sapiens protein ( Homo sapiens
cDNA FLJ12551 fis, clone NT2RM4000700. ).
Length = 664
Score = 43.6 bits (98), Expect = 0.001
Identities = 23/62 (37%), Positives = 36/62 (58%)
Frame = +2
Query: 545 INLLEITSEKMVRLKIITAIPDIIGDQQHNNIAMEISRILNEDHDLIPAILDCLIYLNLS 724
+ L+ I E + IIT++P+I+GD QH ++ E+S +L E+ L ILD L L L
Sbjct: 1 MQLISIAPENLQH-DIITSLPEILGDSQHADVGKELSDLLIENTSLTVPILDVLSSLRLD 59
Query: 725 DE 730
+
Sbjct: 60 PD 61
>Y16414-1|CAA76202.1| 962|Homo sapiens Exportin(tRNA) protein.
Length = 962
Score = 31.5 bits (68), Expect = 4.0
Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 22/162 (13%)
Frame = +2
Query: 356 SNDSVIKILL---SVPILQPKLCDYIFE---KATDQATQSSL-EQWIQIILKC-FSSLDH 511
+ND I +LL S+ +L+ + CD +FE K D + L E Q++ F S+D
Sbjct: 222 ANDRFINMLLGHMSIEVLREEACDCLFEVVNKGMDPVDKMKLVESLCQVLQSAGFFSIDQ 281
Query: 512 IVDSEKMA--MNLIN----LLEITSEKMVRLKIITAIPDIIGDQQHNNIAMEISRILNED 673
D + +A L+N L ++ K+++ I + + +A+ + +++ED
Sbjct: 282 EEDVDFLARFSKLVNGMGQSLIVSWSKLIKNGDIKNAQEAL-QAIETKVALMLQLLIHED 340
Query: 674 HDLIPAILD-CLIYLN-------LSDEEQDHLQKQSLNILKE 775
D+ I+ C YL+ LSD+++ +++ L ++K+
Sbjct: 341 DDISSNIIGFCYDYLHILKQLTVLSDQQKANVEAIMLAVMKK 382
>BC020569-1|AAH20569.1| 962|Homo sapiens exportin, tRNA (nuclear
export receptor for tRNAs) protein.
Length = 962
Score = 31.5 bits (68), Expect = 4.0
Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 22/162 (13%)
Frame = +2
Query: 356 SNDSVIKILL---SVPILQPKLCDYIFE---KATDQATQSSL-EQWIQIILKC-FSSLDH 511
+ND I +LL S+ +L+ + CD +FE K D + L E Q++ F S+D
Sbjct: 222 ANDRFINMLLGHMSIEVLREEACDCLFEVVNKGMDPVDKMKLVESLCQVLQSAGFFSIDQ 281
Query: 512 IVDSEKMA--MNLIN----LLEITSEKMVRLKIITAIPDIIGDQQHNNIAMEISRILNED 673
D + +A L+N L ++ K+++ I + + +A+ + +++ED
Sbjct: 282 EEDVDFLARFSKLVNGMGQSLIVSWSKLIKNGDIKNAQEAL-QAIETKVALMLQLLIHED 340
Query: 674 HDLIPAILD-CLIYLN-------LSDEEQDHLQKQSLNILKE 775
D+ I+ C YL+ LSD+++ +++ L ++K+
Sbjct: 341 DDISSNIIGFCYDYLHILKQLTVLSDQQKANVEAIMLAVMKK 382
>AF039022-1|AAC39793.1| 962|Homo sapiens exportin t protein.
Length = 962
Score = 31.5 bits (68), Expect = 4.0
Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 22/162 (13%)
Frame = +2
Query: 356 SNDSVIKILL---SVPILQPKLCDYIFE---KATDQATQSSL-EQWIQIILKC-FSSLDH 511
+ND I +LL S+ +L+ + CD +FE K D + L E Q++ F S+D
Sbjct: 222 ANDRFINMLLGHMSIEVLREEACDCLFEVVNKGMDPVDKMKLVESLCQVLQSAGFFSIDQ 281
Query: 512 IVDSEKMA--MNLIN----LLEITSEKMVRLKIITAIPDIIGDQQHNNIAMEISRILNED 673
D + +A L+N L ++ K+++ I + + +A+ + +++ED
Sbjct: 282 EEDVDFLARFSKLVNGMGQSLIVSWSKLIKNGDIKNAQEAL-QAIETKVALMLQLLIHED 340
Query: 674 HDLIPAILD-CLIYLN-------LSDEEQDHLQKQSLNILKE 775
D+ I+ C YL+ LSD+++ +++ L ++K+
Sbjct: 341 DDISSNIIGFCYDYLHILKRLTVLSDQQKANVEAIMLAVMKK 382
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,617,513
Number of Sequences: 237096
Number of extensions: 1757547
Number of successful extensions: 7089
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7083
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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