Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_I13
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078788-3|AAC26966.1|  547|Caenorhabditis elegans Hypothetical ...    30   1.8  
AL023835-7|CAA19482.1|  175|Caenorhabditis elegans Hypothetical ...    30   2.4  
AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine rece...    28   7.2  
Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    28   9.5  

>AF078788-3|AAC26966.1|  547|Caenorhabditis elegans Hypothetical
           protein ZC190.6 protein.
          Length = 547

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 24/109 (22%), Positives = 48/109 (44%)
 Frame = +2

Query: 242 VGELFENLQIRCQDMDIFKHYLFPNIVFRIKDNSEEQPSNDSVIKILLSVPILQPKLCDY 421
           +G   EN       M ++   L     F +   S +  S DS   + L    +  K    
Sbjct: 298 IGADAENAIDYTSSMRLYVWSLLHEFAFALHSFSIQMFSLDSKHTLKLLERYITAK--QT 355

Query: 422 IFEKATDQATQSSLEQWIQIILKCFSSLDHIVDSEKMAMNLINLLEITS 568
           I +   +Q    +L   I I+  C++ + H+VD   +A+ ++NL+++++
Sbjct: 356 ITQSVRNQVLSITLGVIISILSMCYAQIIHLVDFHVIAITIMNLVDMSA 404


>AL023835-7|CAA19482.1|  175|Caenorhabditis elegans Hypothetical
           protein Y37A1B.7 protein.
          Length = 175

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 555 KRLIKFIAIFSLSTMWSRLEKHFNIICIHCS 463
           K+L  FIA+F   T W+R + HF   C  CS
Sbjct: 23  KQLALFIALFGAVTAWNR-QNHFGNPCYLCS 52


>AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical
           protein ZC178.1 protein.
          Length = 542

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/145 (17%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
 Frame = +2

Query: 344 EEQPSNDSVIKILLSVPILQPKLCDYIFEKATDQATQSSLEQW--IQIILKCFSSLDHI- 514
           EE  S + V+ +  ++ +++ KL       + +     +LE+   +++++    ++  + 
Sbjct: 92  EELDSVELVMSVEDTIGVVREKLNSVELVMSVEDTIGVALEELNSVELVMSVEDTIGVVR 151

Query: 515 --VDSEKMAMNLINLLEITSEKMVRLKIITAIPDIIGDQQHNNIAMEISRILNEDHDLIP 688
             +DS ++ M++ + + +  EK+  ++++ ++ DIIG       ++E+ R + +   ++ 
Sbjct: 152 EKLDSVELVMSVEDTIGVVREKLDSVELVMSVEDIIGVVLEELDSVELVRSVEDTIGVVL 211

Query: 689 AILDCLIYLNLSDEEQDHLQKQSLN 763
             LD  + L +S E+   + ++ L+
Sbjct: 212 EELDS-VELVMSVEDTIGVVREKLD 235


>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
           protein ZK970.5 protein.
          Length = 1143

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 335 DNSEEQPSNDSVIKILLSV-PILQPKLCDYIFEKATDQATQSSLE 466
           +N EE+PS ++V K+L  + P  +  L D++F    +  +   +E
Sbjct: 808 ENPEERPSAENVCKVLFDMTPNTEDNLMDHVFSMLEEYTSSLEVE 852


>U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein118 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 591 IFNRTIFSDVISKRLIKFIAIFSLSTMWSRLEKHFNIICIHCSKL 457
           +FN +I SD++   L+ F+ +  +  +W   +K  NII +  S +
Sbjct: 221 LFN-SIVSDIVPCILLPFVTLLLVMDLWKTAKKRPNIISVSKSNI 264


>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 28  REFLKILKLVIVSPNKRARKENKDNYLYICLRDSGLTLKD 147
           +E+LKI + +I+  N  A +  K  Y  +CL   G TLKD
Sbjct: 384 KEYLKISEKIIMVDNANASEGLKLTYRSMCL--DGTTLKD 421


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 28  REFLKILKLVIVSPNKRARKENKDNYLYICLRDSGLTLKD 147
           +E+LKI + +I+  N  A +  K  Y  +CL   G TLKD
Sbjct: 384 KEYLKISEKIIMVDNANASEGLKLTYRSMCL--DGTTLKD 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,556,428
Number of Sequences: 27780
Number of extensions: 324054
Number of successful extensions: 837
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)