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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_I12
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    42   1e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.025
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    34   0.025
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.059
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   0.096
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.14 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.55 
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   1.7  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   2.2  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   6.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 25/59 (42%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = -1

Query: 711 PXPPPPXXXGWGXXXAP---PXPQXFXGXXPPPPWGGXXXPPPXXGGXXPXPPPXXPPP 544
           P PPPP         AP   P P    G  PPPP      PPP   G  P PPP  PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP------PPPGVAGAGP-PPPPPPPP 783



 Score = 33.9 bits (74), Expect = 0.034
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -2

Query: 599 PPPXXAGXXPPPPPXXPP 546
           PPP  AG  PPPPP  PP
Sbjct: 766 PPPGVAGAGPPPPPPPPP 783



 Score = 30.3 bits (65), Expect = 0.41
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 944 PPPXGXPPXGXGXXPPPPP 888
           PPP   PP   G  PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -2

Query: 944 PPPXGXPPXGXGXXPPPPPGXXXXXPXXXP 855
           P P   P  G    PPPPPG     P   P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 19/62 (30%), Positives = 19/62 (30%)
 Frame = -2

Query: 944 PPPXGXPPXGXGXXPPPPPGXXXXXPXXXPGXKRGPXRGXXGGXPPXFFXPGGXPPPXXG 765
           PP    P       P PPP      P   P     P  G  G  PP    P   PPP   
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPP-----PPPGVAGAGPP----PPPPPPPAVS 786

Query: 764 XG 759
            G
Sbjct: 787 AG 788



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 599 PPPXXAGXXPPPPPXXPPPXXXXXG 525
           PPP      PPPPP  PPP     G
Sbjct: 752 PPPAPIMGGPPPPP--PPPGVAGAG 774



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
 Frame = -2

Query: 902 PPPPPGXXXXXPXXXP--GXKRGPXRGXXGGXPPXFFXPGGXPPP 774
           PPPPP      P   P       P  G     PP     G  PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.3 bits (75), Expect = 0.025
 Identities = 21/66 (31%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
 Frame = -1

Query: 735 GGGXXXXXPXPPPPXXXGWGXXXAPPXPQXFXGXXPPPPWGG---XXXPPPXXGGXXPXP 565
           G       P PPPP     G    P  PQ      PPPP         PPP         
Sbjct: 330 GSSNSSLPPPPPPPRSNAAGSIPLP--PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN 387

Query: 564 PPXXPP 547
           PP  PP
Sbjct: 388 PPAPPP 393



 Score = 31.1 bits (67), Expect = 0.24
 Identities = 31/130 (23%), Positives = 32/130 (24%), Gaps = 2/130 (1%)
 Frame = -2

Query: 926 PPXGXGXXPPPPPGXXXXXPXXXPGXKRGPXRGXXGGXPPXFFXPGGXPPPXXGXGVFFK 747
           PP G    PPPPP          P              PP    PG   P     G   +
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI--PGRSAPALPPLGNASR 411

Query: 746 XXXXXXGXXXKXPXXPPPXXGXGXPXXPPXGHXFFXXXXXXXXXGXXXXPPPXXAG--XX 573
                       P   PP      P   P G                   PP  AG    
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMG-----APAAPPLPPSAPIAPPLPAGMPAA 466

Query: 572 PPPPPXXPPP 543
           PP PP  P P
Sbjct: 467 PPLPPAAPAP 476



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
 Frame = -1

Query: 711 PXPPPPXXXGWGXXXAPPXPQXFXGXXPPPPW---GGXXXPPPXXGGXXPXPPPXXPPP 544
           P PPPP     G               PPPP         P P  G   P PPP    P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = -1

Query: 705 PPPPXXXGWGXXXAPPXPQXFXGXXPPPPWGGXXXPPPXXGGXXPXPPPXXPP 547
           P  P     G   APP P       PP P G    PP       P P P   P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAP-IAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 19/60 (31%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
 Frame = -1

Query: 711 PXPPPPXXXGWGXXXA----PPXPQXFXGXXPPPPWGGXXXPPPXXGGXXPXPPPXXPPP 544
           P PPP          A    PP P       PPP       PP   G      PP  PPP
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPP-------PPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 34.3 bits (75), Expect = 0.025
 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
 Frame = -1

Query: 705  PPPPXXXGWGXXXAPPXPQXFXGXXP-PPPWGGXXXPPPXXGGXXPXPPPXXPPP 544
            PP P   G     APP P+      P P P  G    P    G  P PPP   PP
Sbjct: 1150 PPVPAPSG-----APPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199



 Score = 33.1 bits (72), Expect = 0.059
 Identities = 18/69 (26%), Positives = 22/69 (31%)
 Frame = +3

Query: 729  PPPGXTLKKNPXPXXGGGXPPXVKKXRGXPPXXTPXGPPFXPRXXXXXXXPXPRGGGGXL 908
            P P  ++   P P    G PP  K   G PP   P   P  P+         P      +
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV 1219

Query: 909  XXPXGGXSP 935
              P  G  P
Sbjct: 1220 PTPSAGLPP 1228



 Score = 33.1 bits (72), Expect = 0.059
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = -1

Query: 663  PPXPQXFXGXXPPPPWGGXXXPPPXXGGXXPXPPPXXPPP 544
            PP P+   G  P PP       P    G  P PPP   PP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 30.7 bits (66), Expect = 0.31
 Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
 Frame = +3

Query: 729  PPPGXTLKKNPXPXXGGGXPPXVKKXRGXPPXXTPXGPPFXPR-XXXXXXXPXPRGGGGX 905
            P P  ++   P P   G  PP  K     PP   P G P  P+        P P  G   
Sbjct: 1122 PVPKPSVAAPPVPVPSGA-PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180

Query: 906  LXXPXGGXSP 935
            +  P  G  P
Sbjct: 1181 VPKPAAGVPP 1190



 Score = 29.1 bits (62), Expect = 0.95
 Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
 Frame = -2

Query: 944  PPPXGXPPXGX-GXXPPPPPGXXXXXPXXXPGXKRGPXRGXXGGXPPXFFXPGGXPP 777
            P P G PP        PP P      P   P     P      G PP      G PP
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190



 Score = 29.1 bits (62), Expect = 0.95
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = -1

Query: 666  APPXPQXFXGXXPPPPWGGXXXPPPXXGGXXPXPPPXXPPP 544
            APP P+   G  P PP       P    G  P P P    P
Sbjct: 1197 APPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
 Frame = -1

Query: 705  PPPPXXXGWGXXXAPPXPQXFXGXXPPP-PWGGXXXPPPXXGGXXPXPPPXXPPP 544
            PP P   G     APP P+      P P P G    P P      P P P   PP
Sbjct: 1112 PPVPAPSG-----APPVPKPSVAAPPVPVPSGAPPVPKPSVAAP-PVPAPSGAPP 1160



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
 Frame = -1

Query: 666  APPXPQXFXGXXP-PPPWGG-XXXPPPXXGGXXPXPP---PXXPPP 544
            APP P    G  P P P  G    PPP      P P    P  PPP
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
 Frame = -1

Query: 666  APPXPQXFXGXXP-PPPWGGXXXPPPXXGGXXPXPPPXXPPP 544
            APP P+      P P P G    P P      P P P   PP
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAP-PVPVPSGAPP 1141



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +3

Query: 729  PPPGXTLKKNPXPXXGGGXPPXVKKXRGXPPXXTPXGPPFXPR 857
            P P  ++   P P   G  PP  K     PP   P G P  P+
Sbjct: 1103 PVPKPSVAVPPVPAPSGA-PPVPKPSVAAPPVPVPSGAPPVPK 1144



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = -1

Query: 666  APPXPQXFXGXXPPPPWGGXXXPPPXXGGXXPXPPPXXPPP 544
            APP P       PP P      P P      P  PP  P P
Sbjct: 1031 APPIP--VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAP 1069



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 16/54 (29%), Positives = 17/54 (31%)
 Frame = -1

Query: 705  PPPPXXXGWGXXXAPPXPQXFXGXXPPPPWGGXXXPPPXXGGXXPXPPPXXPPP 544
            PP P   G      PP P+      P P       P P   G  P P P    P
Sbjct: 1083 PPVPAPSG-----IPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAP 1131


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.1 bits (72), Expect = 0.059
 Identities = 21/56 (37%), Positives = 22/56 (39%)
 Frame = +2

Query: 545 GGGXWGGGXGXXPPXXGGGXXXPPQGGGGXXPXKXCGXGGAXXXPXPXXXGGGGXG 712
           G G +GGG G  PP  GG       GG G       G GG    P     G GG G
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGF---GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG 241



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 19/56 (33%), Positives = 20/56 (35%)
 Frame = +2

Query: 545 GGGXWGGGXGXXPPXXGGGXXXPPQGGGGXXPXKXCGXGGAXXXPXPXXXGGGGXG 712
           G G +GGG G      GG    P   GGG       G GG          G GG G
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG-----GFGGGPGGFGGGPGGHGGPG 272



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +1

Query: 544 GGGXXGGGGGXXPAXXGGGXXXXPPRGGGXP 636
           GGG  G GGG      G G     P G G P
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect(2) = 0.096
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 568 PPPPXPPPPXXXXXG 524
           PPPP PPPP     G
Sbjct: 945 PPPPPPPPPLVSAAG 959



 Score = 24.2 bits (50), Expect(2) = 0.096
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 574 PXPPPPXPPPP 542
           P  PPP PPPP
Sbjct: 942 PAFPPPPPPPP 952


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 22/63 (34%), Positives = 22/63 (34%)
 Frame = -1

Query: 732  GGXXXXXPXPPPPXXXGWGXXXAPPXPQXFXGXXPPPPWGGXXXPPPXXGGXXPXPPPXX 553
            GG     P   PP         A P PQ      PPPP      PPP      P  PP  
Sbjct: 1679 GGMAPAHPVSTPPVRP----QSAAP-PQMSAPTPPPPPMS---VPPPPSAPPMPAGPPSA 1730

Query: 552  PPP 544
            PPP
Sbjct: 1731 PPP 1733



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -1

Query: 711  PXPPPPXXXGWGXXXAPPXPQXFXGXXPPP 622
            P PPPP         APP P       PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 621 PWGGXXXPPPXXGGXXPXPPPXXPPP 544
           P G    PPP  G   P  PP  PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 944 PPPXGXPPXGXGXXPPPPPG 885
           PPP G  P      PPPPPG
Sbjct: 13  PPPPGFEPPSQ-PPPPPPPG 31



 Score = 23.4 bits (48), Expect(2) = 7.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 923 PXGXGXXPPPPPG 885
           P G    PPPPPG
Sbjct: 5   PPGNPPPPPPPPG 17



 Score = 20.6 bits (41), Expect(2) = 7.3
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -2

Query: 812 PPXFFXPGGXPPPXXGXG 759
           PP  F P   PPP    G
Sbjct: 14  PPPGFEPPSQPPPPPPPG 31


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 599 PPPXXAGXXPPPPPXXPPP 543
           P P   G  PPPPP  P P
Sbjct: 347 PTPQVQGSRPPPPPPMPAP 365


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 21/61 (34%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
 Frame = -1

Query: 705 PPPPXXXGWGXXXAPPXPQXFXG-XXPPPPW---GGXXXPPP----XXGGXXPXPPPXXP 550
           PPPP     G    PP      G   PPPP     G   PPP      G   P PP    
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 267

Query: 549 P 547
           P
Sbjct: 268 P 268



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 21/61 (34%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
 Frame = -1

Query: 705 PPPPXXXGWGXXXAPPXPQXFXG-XXPPPPW---GGXXXPPP----XXGGXXPXPPPXXP 550
           PPPP     G    PP      G   PPPP     G   PPP      G   P PP    
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 306

Query: 549 P 547
           P
Sbjct: 307 P 307



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
 Frame = -1

Query: 705 PPPPXXXGWGXXXAPPXPQXFXG-XXPPPPW---GGXXXPPP----XXGGXXPXPP 562
           PPPP     G    PP      G   PPPP     G   PPP      G   P PP
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 568 PPPPXPPPP 542
           PPPP PPPP
Sbjct: 306 PPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 568 PPPPXPPPP 542
           PPPP PPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 22.2 bits (45), Expect(2) = 7.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 593 PXXAGXXPPPPPXXPP 546
           P  A   P PPP  PP
Sbjct: 229 PKQADPLPAPPPPPPP 244



 Score = 21.8 bits (44), Expect(2) = 7.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 572 PPPPPXXPPP 543
           PPPPP   PP
Sbjct: 239 PPPPPPTLPP 248


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 16/55 (29%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
 Frame = -1

Query: 705 PPPPXXXGWGXXXAPPXPQXFXGXXPPP-PWGGXXXPPPXXGGXXPXPPPXXPPP 544
           PP P         APP P        P  P       P       P PP   PPP
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,644
Number of Sequences: 5004
Number of extensions: 36084
Number of successful extensions: 337
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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