Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_I12
         (945 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.00 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.00
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = -1

Query: 660 PXPQXFXGXXPPPPWGGXXXPPPXXGGXXPXPPPXXPP 547
           P PQ      P  P  G   PP    G  P  PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGS--PPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 12/41 (29%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
 Frame = -2

Query: 923 PXGXGXXPPPPPGXXXXXPXXX--PGXKRGPXRGXXGGXPP 807
           P      P P P      P     P   +GP  G   G PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 568 PPPPXPPPPXXXXXG 524
           PP P PPPP     G
Sbjct: 338 PPKPAPPPPPPSSSG 352



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 574 PXPPPPXPPP 545
           P P PP PPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 574 PXPPPPXPPPP 542
           P  P P PPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 568  PPPPXPPP 545
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 565  PPPXPPPP 542
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = -1

Query: 705  PPPPXXXGWGXXXAPPXPQXFXGXXPPPPWGGXXXPP 595
            PP P     G   A   PQ      P P  GG    P
Sbjct: 999  PPQPANAQQGQAQAQAKPQSQEANKPKPATGGKGTRP 1035


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,030
Number of Sequences: 438
Number of extensions: 8744
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)