Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_I10
         (879 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068585-1|AAH68585.1|  538|Homo sapiens HERV-FRD provirus ances...    31   4.2  
AY358244-1|AAQ88611.1|  538|Homo sapiens GLLL6191 protein.             31   4.2  
AK123938-1|BAC85731.1|  538|Homo sapiens protein ( Homo sapiens ...    31   4.2  
AK075092-1|BAC11396.1|  144|Homo sapiens protein ( Homo sapiens ...    31   4.2  

>BC068585-1|AAH68585.1|  538|Homo sapiens HERV-FRD provirus
           ancestral Env polyprotein protein.
          Length = 538

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 80  SWLYFYWLLPSRHQLKSLMMLKPPQLFQPSTLRL-RYMISETFQTRKVENLMKVLTHPST 256
           +W +F W+LP    L SL++L    LF P  L L    +S   Q  K++  +    HP  
Sbjct: 476 TWKWFSWVLPLTGPLVSLLLL---LLFGPCLLNLITQFVSSRLQAIKLQTNLSAGRHPRN 532

Query: 257 L 259
           +
Sbjct: 533 I 533


>AY358244-1|AAQ88611.1|  538|Homo sapiens GLLL6191 protein.
          Length = 538

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 80  SWLYFYWLLPSRHQLKSLMMLKPPQLFQPSTLRL-RYMISETFQTRKVENLMKVLTHPST 256
           +W +F W+LP    L SL++L    LF P  L L    +S   Q  K++  +    HP  
Sbjct: 476 TWKWFSWVLPLTGPLVSLLLL---LLFGPCLLNLITQFVSSRLQAIKLQTNLSAGRHPRN 532

Query: 257 L 259
           +
Sbjct: 533 I 533


>AK123938-1|BAC85731.1|  538|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41944 fis, clone PLACE6012574. ).
          Length = 538

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 80  SWLYFYWLLPSRHQLKSLMMLKPPQLFQPSTLRL-RYMISETFQTRKVENLMKVLTHPST 256
           +W +F W+LP    L SL++L    LF P  L L    +S   Q  K++  +    HP  
Sbjct: 476 TWKWFSWVLPLTGPLVSLLLL---LLFGPCLLNLITQFVSSRLQAIKLQTNLSAGRHPRN 532

Query: 257 L 259
           +
Sbjct: 533 I 533


>AK075092-1|BAC11396.1|  144|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90611 fis, clone PLACE1001836, weakly similar to
           ENV POLYPROTEIN PRECURSOR. ).
          Length = 144

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 80  SWLYFYWLLPSRHQLKSLMMLKPPQLFQPSTLRL-RYMISETFQTRKVENLMKVLTHPST 256
           +W +F W+LP    L SL++L    LF P  L L    +S   Q  K++  +    HP  
Sbjct: 82  TWKWFSWVLPLTGPLVSLLLL---LLFGPCLLNLITQFVSSRLQAIKLQTNLSAGRHPRN 138

Query: 257 L 259
           +
Sbjct: 139 I 139


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,563,124
Number of Sequences: 237096
Number of extensions: 1471607
Number of successful extensions: 2823
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2818
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)