Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_I09
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U97010-1|AAB52322.1|  334|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AL032626-16|CAA21542.1|  101|Caenorhabditis elegans Hypothetical...    28   7.6  

>U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical
           protein C04E6.11 protein.
          Length = 995

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 618 LHAPRQPLVLLR-CLQLQREAERVQPRQLLHRGARVL 511
           LH P   + LLR CLQ   +  R+  + +LHRG+  L
Sbjct: 792 LHCPNGTVALLRHCLQQNTDEARMNLQFVLHRGSTFL 828


>U97010-1|AAB52322.1|  334|Caenorhabditis elegans Hypothetical
           protein W08A12.4 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 465 AQVLQHQCFLEPPRPRAVQRGEH 397
           +Q+L+H+C +  PRP  ++  +H
Sbjct: 220 SQILEHRCLVSSPRPTDIEEWKH 242


>AL032626-16|CAA21542.1|  101|Caenorhabditis elegans Hypothetical
           protein Y37D8A.19 protein.
          Length = 101

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 97  PAPRCPSCRA--RCPSGLTAKNLKGFPIMXG 11
           PA RCP C A     +GL+A    GFP   G
Sbjct: 61  PAERCPGCCASVALAAGLSADRASGFPSTNG 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,907,713
Number of Sequences: 27780
Number of extensions: 195685
Number of successful extensions: 664
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)