Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_I07
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    34   0.031
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    31   0.22 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.5  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   6.1  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   8.1  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 284 PPADSSGRPNTSAIVERSRERRPPPLVPSVTVVHGPR-PSLPSALPPQP 427
           PP   +  P   +         PPP  P+  V   P  PSLPSA+PP P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +2

Query: 278 AGPPADSSGRPNTSAIVERSRERRPPPLVPSVTVVHGPRPSLPSALPP 421
           A P   S  RP TSA     R   PPP   S   +    P +PS+LPP
Sbjct: 129 APPTPQSELRPPTSA---PPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
 Frame = +2

Query: 275 HAGPPADSSGRPNTSAIVERSRERRPPPLVPSVTVVHGPRPS----LPSALPPQP 427
           H G  + S+  P+  A      E RPP   P    +  P P+    +PS  PP P
Sbjct: 114 HIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +2

Query: 275 HAGPPADSSGRPNTSAIVERSRERRPPPLVP-----SVTVVHGPR-PSLPSALPPQPV 430
           H  PP   +   NT   ++   E   PP++P     S +  H  + P+LPS LPP+P+
Sbjct: 140 HTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSSSSEQHFRKVPALPSKLPPKPL 197


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +2

Query: 284 PPADSSGRPNTSAIVERSRERRPPPLVPSVTVVHGPRPSLPSALP 418
           PP   S  P        S  R+PPPL  S  V + P P  P A+P
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP--PPAIP 396


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = +2

Query: 332 RSRERRPP--PLV----PSVTVVHGPRPSLPSA 412
           RS    PP  PL+    PS +++H P P+ PSA
Sbjct: 278 RSSSTSPPRSPLIISDSPSSSIIHNPHPTHPSA 310


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 284 PPADSSGRPNTSAIVERSRERRPPPLVPSVTVVHGPRPSLPSALPP 421
           PP+ +S   + + ++  S    P   +P     +GP+ SLP +  P
Sbjct: 95  PPSSTSSLSSNNQLMNSSVILSPGQFLPDDANAYGPKASLPPSEMP 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,963
Number of Sequences: 5004
Number of extensions: 30628
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)