Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_I07
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    29   0.043
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 29.5 bits (63), Expect = 0.043
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 278  AGPPADSSGRPNTSAIVERSRERRPPPLVPSVTVVHGPRPSLPSALPPQPV 430
            +G  + SS    T+  V + +++R       + ++H     LP ALPPQ V
Sbjct: 1069 SGSDSGSSNGSWTAGTVSQQKQKRRMVKYGKLVMIHEENAPLPPALPPQVV 1119



 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 100 QIAPSNTGQQLIPTI*ILXXVPI 32
           Q  P NT  Q IP I IL  +P+
Sbjct: 771 QNVPQNTNSQAIPRIPILPMIPV 793


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 336 DRSTIAEVFGRPDESAGG 283
           + S++ ++F  P+ES+GG
Sbjct: 46  EESSLNDLFSGPEESSGG 63


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +1

Query: 433  QTRHPAAIEDACPAASFRPSSDEASTA*KRYTDSLSNVPLPFPYGLKM 576
            +T+  + +  A  A + RP + +     K      S   +P P G+KM
Sbjct: 1099 KTKETSTVTAAAAATNIRPGTADNKPQLKPQKPFTSPGGIPGPNGIKM 1146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,059
Number of Sequences: 438
Number of extensions: 3041
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)