Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_I05
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    31   0.22 
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   4.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.3  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 735 VTGKVWLAKWRGEKVAVKVFFTTEEXSWFRETENY 839
           ++ K+W   +R   +AVKV FT ++ +WF + ENY
Sbjct: 845 ISAKIWCDHYR--LLAVKVLFTQDQ-AWFDQIENY 876


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 808 SSVVKNTLTATFSPRHFASHT 746
           ++V  N + ++ SPRHF+SHT
Sbjct: 566 AAVSANDVLSSSSPRHFSSHT 586


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 433 LHPQLSEPSPDVTESPGVRPPNHEQSHLIGRHRSLCGSHRFPGS 564
           L  Q++ P P  T S   RPP +  +   G   S+  S+  P S
Sbjct: 266 LGSQVNIPPPPATPSQPPRPPTNASTRSTGTSSSMAHSYDSPPS 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,388
Number of Sequences: 5004
Number of extensions: 53034
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)