Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_I04
(871 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 172 6e-44
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 171 8e-44
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 6.1
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 8.0
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 172 bits (418), Expect = 6e-44
Identities = 100/212 (47%), Positives = 124/212 (58%), Gaps = 5/212 (2%)
Frame = +3
Query: 87 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 266
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 267 SSEALEAGRICCNKYLXKELRKGSVPYPHETSPFPRYPHQ*NVIVRWS**APDWDAWCVW 446
+SEALEA RIC NKYL K K S PF H + S D +
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPF----HVVRINKMLSCAGADRLQTGMR 116
Query: 447 QASGXL*HVFALDNPSCPCALVTGGRHRSSRLCAVPS-----SSSPXRQKIYVSKKWGFT 611
A G + A N L++ SSR A+ + P +Q+I VSKKWGF+
Sbjct: 117 HAFGKPNGLVARVN--IGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFS 174
Query: 612 KYERDEFEKLREEGRLANDGCIVQYRPEHGPL 707
+Y RDE+ + R G + DGC ++ + G L
Sbjct: 175 QYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
Score = 87.8 bits (208), Expect = 2e-18
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +1
Query: 328 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 459
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNG 124
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +2
Query: 464 VARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGF 607
VARV IGQ +MSVR+ D +A IEALRR ++KFPG + + K+ GF
Sbjct: 126 VARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGF 173
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 171 bits (417), Expect = 8e-44
Identities = 100/212 (47%), Positives = 124/212 (58%), Gaps = 5/212 (2%)
Frame = +3
Query: 87 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 266
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 267 SSEALEAGRICCNKYLXKELRKGSVPYPHETSPFPRYPHQ*NVIVRWS**APDWDAWCVW 446
+SEALEA RIC NKYL K K S PF H + S D +
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPF----HVVRINKMLSCAGADRLQTGMR 116
Query: 447 QASGXL*HVFALDNPSCPCALVTGGRHRSSRLCAVPS-----SSSPXRQKIYVSKKWGFT 611
A G + A N L++ SSR A+ + P +Q+I VSKKWGF+
Sbjct: 117 HAFGKPNGLVARVN--IGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFS 174
Query: 612 KYERDEFEKLREEGRLANDGCIVQYRPEHGPL 707
+Y RDE+ + R G + DGC ++ + G L
Sbjct: 175 QYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
Score = 87.8 bits (208), Expect = 2e-18
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +1
Query: 328 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 459
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNG 124
Score = 53.2 bits (122), Expect = 5e-08
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +2
Query: 464 VARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGF 607
VARV IGQ +MSVR+ D +A IEALRR ++KFPG + + K+ GF
Sbjct: 126 VARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGF 173
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 111 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 287
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 288 G 290
G
Sbjct: 94 G 94
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +3
Query: 189 DLGKKRANVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLXKELRK 332
++ KKRA DD + +VS EYE L SS+ ++ N KY+ K ++K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 144 SRFCRGVPDPKIRIFDLGKKRANVDDFP-LCVHLVSDE 254
S FC PDPK K A+ DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,416,553
Number of Sequences: 5004
Number of extensions: 72858
Number of successful extensions: 235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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