Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_I04
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 137 9e-33
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 134 1e-31
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 130 1e-30
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 32 0.52
02_02_0317 + 8893593-8894207 31 1.6
01_05_0379 + 21630223-21631188 29 4.8
07_03_0604 + 19903654-19904598 28 8.5
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 28 8.5
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 137 bits (332), Expect = 9e-33
Identities = 62/94 (65%), Positives = 70/94 (74%)
Frame = +3
Query: 87 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 266
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 267 SSEALEAGRICCNKYLXKELRKGSVPYPHETSPF 368
SSEALEA RI CNKY+ K K + PF
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPF 94
Score = 100 bits (240), Expect = 1e-21
Identities = 42/50 (84%), Positives = 47/50 (94%)
Frame = +1
Query: 319 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGYCS 468
KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQG C+
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 127
Score = 57.2 bits (132), Expect = 2e-08
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +3
Query: 567 PXRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 707
P RQKI S+KWGFTK+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 160 PGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Frame = +2
Query: 461 TVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGFHK 613
T ARV IGQ ++SVR + EALRRAKFKFPG K + ++ GF K
Sbjct: 125 TCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTK 175
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 134 bits (323), Expect = 1e-31
Identities = 86/200 (43%), Positives = 105/200 (52%), Gaps = 12/200 (6%)
Frame = +3
Query: 108 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 287
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 288 GRICCNKYLXKELRKGSVPYPHETSPFPRYPHQ*NVIVRWS**APDWDAWCVWQASGXL* 467
RI CNKY+ K K + PF H + S C
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPF----HVLRINKMLS---------CAGADRLQTG 110
Query: 468 HVFALDNPSCPCALVTGGRHRSSRLC----AVPSSSSPXRQK--------IYVSKKWGFT 611
A P CA V G+ S C AV +S + R K I S+KWGFT
Sbjct: 111 MRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFT 170
Query: 612 KYERDEFEKLREEGRLANDG 671
K+ RDE+ +L+ EGR+ DG
Sbjct: 171 KFSRDEYVRLKSEGRIMPDG 190
Score = 98.7 bits (235), Expect = 5e-21
Identities = 41/50 (82%), Positives = 47/50 (94%)
Frame = +1
Query: 319 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGYCS 468
K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQG C+
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/51 (50%), Positives = 31/51 (60%)
Frame = +2
Query: 461 TVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGFHK 613
T ARV IGQ ++SVR EALRRAKFKFPG K + ++ GF K
Sbjct: 121 TCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTK 171
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 130 bits (315), Expect = 1e-30
Identities = 57/78 (73%), Positives = 64/78 (82%)
Frame = +3
Query: 99 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEA 278
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 279 LEAGRICCNKYLXKELRK 332
LEA RI CNKY+ K K
Sbjct: 372 LEAARIACNKYMAKHAGK 389
Score = 91.1 bits (216), Expect = 1e-18
Identities = 38/50 (76%), Positives = 44/50 (88%)
Frame = +1
Query: 319 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGYCS 468
K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP G C+
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCA 434
Score = 53.6 bits (123), Expect = 2e-07
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = +3
Query: 567 PXRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 701
P RQ++ S KWGFT+++RDE+ KL+ EGR+ DG + HG
Sbjct: 467 PGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
Score = 51.2 bits (117), Expect = 1e-06
Identities = 27/49 (55%), Positives = 32/49 (65%)
Frame = +2
Query: 461 TVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGF 607
T ARVRIGQ ++SVR D A EALRRAKFKFPG + + + GF
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGF 480
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 32.3 bits (70), Expect = 0.52
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +3
Query: 225 PLC-VHLVSDEYEQLSSEALEAGRICCNKYLXKELR---KGSVP 344
P C +HL SD Y S E ++AG+ C L KEL +G VP
Sbjct: 592 PRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELGLPVRGDVP 635
>02_02_0317 + 8893593-8894207
Length = 204
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -2
Query: 738 GSQPEPSSKRREVHVP---GGTARCSRHWRGGP 649
G +P P++ R +HVP GG R RHWR P
Sbjct: 3 GRRPRPAAGTR-IHVPQPCGGEIRWERHWRPDP 34
>01_05_0379 + 21630223-21631188
Length = 321
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 417 APDWDAWCVWQASGXL*HVFALDNPSCPCALVTGGRH 527
AP ++ WC W ASG H NP A+ GG H
Sbjct: 83 APPYN-WCPWDASGVRGHPRDPRNPIRCIAICVGGSH 118
>07_03_0604 + 19903654-19904598
Length = 314
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 693 PGGTARCSRHWRGGPLHAASQTHH 622
PGG R R G P+H A + HH
Sbjct: 80 PGGRRRRPRRVEGAPVHRARRLHH 103
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 210 NVDDFPLCVHLVSDEYEQLSSEALEAGR-ICC 302
NV++ P + L+ DE +++ E L AGR I C
Sbjct: 679 NVEEIPTSMDLMKDENDKIQLEILTAGRNIAC 710
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,056,610
Number of Sequences: 37544
Number of extensions: 551578
Number of successful extensions: 1674
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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