Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_I03
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    29   0.90 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.4  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 854 GXPPXKXPPXPPPXSHP 904
           G PP + PP P P SHP
Sbjct: 105 GGPPSQLPPPPQPQSHP 121


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 30/129 (23%), Positives = 34/129 (26%), Gaps = 5/129 (3%)
 Frame = +1

Query: 532 PPP-----GXXGLXFGXXSXSPPXXPXAPXLXVGXXXSXPPKGGIRVXPKXGGXPRKKPX 696
           PPP     G   +  G  + S P  P  P          PP+G            R  P 
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG------------RSAPP 362

Query: 697 NQRAXKGPXTXXXXXXXXXXXXXXXPPXXPXKKFXPQXQRGAXPPXXFKKSXGVXPLXXP 876
                  P T               PP  P     P     A PP          P+  P
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA--IPGRSAPALPPLGNASRTSTPPVPTP 420

Query: 877 PXAPPXFPP 903
           P  PP  PP
Sbjct: 421 PSLPPSAPP 429


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 827 PPGXLKNPXGXPPXKXPPXPPP 892
           PP     P   PP + PP PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,410
Number of Sequences: 5004
Number of extensions: 22642
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)