Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_I03
(904 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.21
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.21
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.21
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.21
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 31 0.85
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 31 0.85
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 0.85
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 30 2.6
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 3.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.4
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 29 3.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.4
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 6.0
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 6.0
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 6.0
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 6.0
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 6.0
Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 7.9
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 28 7.9
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 7.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 7.9
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPG-XLKNPXGXPPXKXPPXPP 889
P PPPR P + PP +NP PP PP PP
Sbjct: 152 PRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPP 196
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXPPPXSHP 904
P PPPR S P PP + P PP PP PP + P
Sbjct: 123 PPPPPPRKSRAGGSSPP------PPPPPRVPRTPPPRSPPPRRPPMTPP 165
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.5 bits (73), Expect = 0.21
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXPPPXSHP 904
P G PP K S P G PP P PP PP S P
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 281
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXK-GGXXPPGXLKNPXGXPPXK--XPPXPPPXSHP 904
P PPPR S P + GG PP +P P K P PP P
Sbjct: 298 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 349
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXPPPXSHP 904
P G PP P G PP P PP PP PP P
Sbjct: 243 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP--PPTGSPPPPPAGGSP 289
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.5 bits (73), Expect = 0.21
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXPPPXSHP 904
P G PP K S P G PP P PP PP S P
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 302
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXK-GGXXPPGXLKNPXGXPPXK--XPPXPPPXSHP 904
P PPPR S P + GG PP +P P K P PP P
Sbjct: 319 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 370
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXPPPXSHP 904
P G PP P G PP P PP PP PP P
Sbjct: 264 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP--PPTGSPPPPPAGGSP 310
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.21
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXPPPXSHP 904
P G PP K S P G PP P PP PP S P
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 287
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXK-GGXXPPGXLKNPXGXPPXK--XPPXPPPXSHP 904
P PPPR S P + GG PP +P P K P PP P
Sbjct: 304 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 355
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXPPPXSHP 904
P G PP P G PP P PP PP PP P
Sbjct: 249 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP--PPTGSPPPPPAGGSP 295
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 31.5 bits (68), Expect = 0.85
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXK-GGXXPPGXLKNPXG-XPPXKXPPXPPPXSHP 904
P GPP Q++ P G PPG ++ P G PP P PP + P
Sbjct: 714 PQGPPGPPGPQQHPGPYPGYPGYGPPGAMRPPAGFAPPPGAPYGYPPGAPP 764
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/63 (26%), Positives = 19/63 (30%)
Frame = +3
Query: 711 QRAXNPKKAPXGWXFSXRAXPPGXXXKKIXPPXSKGGXXPXGX*KIPXGXPPXXPPXGPP 890
QR P + A G + P G P P P PP GPP
Sbjct: 409 QRKREPAGGNAAAAAAVAAAQQGDQKSQHGAPGGSGAPPPGPPGAYPGNGAPGGPPGGPP 468
Query: 891 LFP 899
FP
Sbjct: 469 QFP 471
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.5 bits (68), Expect = 0.85
Identities = 19/49 (38%), Positives = 21/49 (42%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXPPPXSHP 904
P G PP + P GG PPG +P G PP PP P P P
Sbjct: 492 PSGGPPGPFNPSGAPP--SGG--PPGPF-DPSGAPPSGMPPVPLPTDLP 535
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXP 886
P G PP + P GG PPG NP G PP PP P
Sbjct: 237 PSGGPPGPFDPSGAPP--SGG--PPGPF-NPSGAPPSGGPPGP 274
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXP 886
P G PP + P GG PPG NP G PP PP P
Sbjct: 297 PSGGPPGPFDPSGAQP--SGG--PPGPF-NPSGAPPSGGPPGP 334
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXP 886
P G PP + P GG PPG NP G PP PP P
Sbjct: 327 PSGGPPGPFDPSGAPP--SGG--PPGPF-NPSGAPPSGGPPGP 364
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXP 886
P G PP + P GG PPG NP G PP PP P
Sbjct: 387 PSGGPPGPFDPSGAPP--SGG--PPGPF-NPSGAPPSGGPPGP 424
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXP 886
P G PP + P GG PPG NP G PP PP P
Sbjct: 402 PSGGPPGPFNPSGAPP--SGG--PPGPF-NPSGAPPSGGPPGP 439
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXP 886
P G PP + P GG PPG NP G PP PP P
Sbjct: 417 PSGGPPGPFNPSGAPP--SGG--PPGPF-NPSGAPPSGGPPGP 454
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXP 886
P G PP + P GG PPG NP G PP PP P
Sbjct: 432 PSGGPPGPFNPSGAPP--SGG--PPGPF-NPSGAPPSGGPPGP 469
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXP 886
P G PP + P GG PPG NP G PP PP P
Sbjct: 447 PSGGPPGPFNPSGAPP--SGG--PPGPF-NPSGAPPSGGPPGP 484
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXP 886
P G PP + P GG PPG L +P G PP PP P
Sbjct: 147 PSGGPPGPFDPSGAPP--SGG--PPG-LFDPSGAPPSGGPPGP 184
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXP 886
P G PP + P GG PPG +P G PP PP P
Sbjct: 252 PSGGPPGPFNPSGAPP--SGG--PPGPF-DPSGAPPSGGPPGP 289
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXP 886
P G PP + P GG PPG +P G PP PP P
Sbjct: 267 PSGGPPGPFDPSGAPP--SGG--PPGPF-DPSGAPPSGGPPGP 304
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXP 886
P G PP + P GG PPG +P G PP PP P
Sbjct: 342 PSGGPPGPFNPSGAPP--SGG--PPGPF-DPSGAPPSGGPPGP 379
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXP 886
P G PP + P GG PPG +P G PP PP P
Sbjct: 357 PSGGPPGPFDPSGAPP--SGG--PPGPF-DPSGAPPSGGPPGP 394
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXP 886
P G PP + P GG PPG +P G PP PP P
Sbjct: 462 PSGGPPGPFNPSGAPP--SGG--PPGPF-DPSGAPPSGGPPGP 499
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXP 886
P G PP + P GG PPG P G PP PP P
Sbjct: 162 PSGGPPGLFDPSGAPP--SGG--PPGPF-GPSGAPPSGGPPGP 199
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 31.5 bits (68), Expect = 0.85
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = +2
Query: 767 PPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXPP 889
PPPR P GG PP P G PP P PP
Sbjct: 1574 PPPRGGSHCQGPPPLMGGP-PPRLGMPPPGPPPPNGGPPPP 1613
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +1
Query: 772 PPXXPXKKFXPQXQRGAXPPXXFKKSXGVXPLXXPPXAPPXFPP 903
PP P K P Q A P + + P PP PP PP
Sbjct: 324 PPPPPPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPPP 367
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 758 PXGPP-PRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXPP 889
P GPP P+ + P G PG + G P PP PP
Sbjct: 220 PPGPPGPQGPPGADGLPGNPGAPGVPGQVIEVPGTPGPAGPPGPP 264
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = +2
Query: 767 PPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKX--PPXPPPXS 898
PPP P GG PP + PP PP PPP S
Sbjct: 76 PPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPS 121
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 801 PPXSKGGXXPXGX*KIPXGXPPXXPPXG-PPL 893
PP + G P G I G PP PP G PP+
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPI 738
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 801 PPXSKGGXXPXGX*KIPXGXPPXXPPXG-PPL 893
PP + G P G I G PP PP G PP+
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPI 738
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXPPP 892
P GPPP + P + PP + P G PP PP P P
Sbjct: 52 PFGPPP--PWDRPPPPWRR----PPWHRRPPWGLPPPPPPPEPEP 90
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 801 PPXSKGGXXPXGX*KIPXGXPPXXPPXG-PPL 893
PP + G P G I G PP PP G PP+
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPI 321
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPP--GXLKNPXGXPPXKXPP 880
P PPP P GG PP P G PP PP
Sbjct: 787 PGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPPNMAPP 829
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 827 PPGXLKNPXGXPPXKXPPXPPPXSHP 904
PP + P PP PP PPP P
Sbjct: 66 PPPPICPPPPPPPMPCPPPPPPMPRP 91
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPP--GXLKNPXGXPPXKXPP 880
P PPP P GG PP P G PP PP
Sbjct: 787 PGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPPNMAPP 829
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 28.7 bits (61), Expect = 6.0
Identities = 24/67 (35%), Positives = 25/67 (37%)
Frame = -3
Query: 902 GGKXGGAXGGXXRGXTPXDFLXSXGGXAPL*XWGXNFFXGXSGGXGPXGKXPPXRGLFRV 723
GG+ GG GG RG S GG WG N G GG G G G
Sbjct: 134 GGRGGGGRGGDGRGPP-----GSNGGG----DWGGNGGGGRGGGGGRGGGGGGGAGERIA 184
Query: 722 XGPLXAL 702
G L AL
Sbjct: 185 EGVLGAL 191
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 758 PXGPP-PRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPP 880
P GPP P N P KG PPG P G P PP
Sbjct: 159 PLGPPGPPGPEGPNGEPGNKGPAGPPG----PGGKPGPAGPP 196
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = +2
Query: 758 PXGPP-PRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXPP-PXSHP 904
P GPP P + G PPG + P G P K P PP P P
Sbjct: 141 PEGPPGPAGPPGPDGNKGPLGPPGPPGP-EGPNGEPGNKGPAGPPGPGGKP 190
>Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical
protein T16G1.1 protein.
Length = 695
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +2
Query: 764 GPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXPPPXS 898
GPPPR N G N PP PP PPP S
Sbjct: 502 GPPPRNNGNNNGNGRPMKPPSSSGSGSNRRSGPP---PPPPPPRS 543
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.9
Identities = 31/125 (24%), Positives = 37/125 (29%), Gaps = 2/125 (1%)
Frame = +1
Query: 532 PPPGXXGLXFGXXSXSPPXXPXAPXLXVGXXXSXPPKGGIRVXPKXGGXPRKKPX-NQRA 708
PPP G PP P P + PP + P G PR P +
Sbjct: 245 PPPLMGMAQSGYQGQYPPVPPPPPSVT-----PMPPP----MPPTPGMTPRPPPPPSSGM 295
Query: 709 XKGPXTXXXXXXXXXXXXXXXPPXXPXKKFXPQXQRGAXPPXXFKKSXGV-XPLXXPPXA 885
P PP P +F P G PP G+ P PP
Sbjct: 296 WPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPP----PPPGMRYPGGMPPPP 351
Query: 886 PPXFP 900
PP +P
Sbjct: 352 PPRYP 356
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGX-LKNPXGXP--PXKXPPXPP 889
P P P + S G PPG + P G P P + PP PP
Sbjct: 226 PPSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGPPTRRPPGPP 272
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +2
Query: 758 PXGPPPRXXXQKNSXPXXKGGXXPPGXLKNPXGXPPXKXPPXPPPXSHP 904
P PPP P PP P PP PP PP P
Sbjct: 29 PCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPP 77
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 7.9
Identities = 31/125 (24%), Positives = 37/125 (29%), Gaps = 2/125 (1%)
Frame = +1
Query: 532 PPPGXXGLXFGXXSXSPPXXPXAPXLXVGXXXSXPPKGGIRVXPKXGGXPRKKPX-NQRA 708
PPP G PP P P + PP + P G PR P +
Sbjct: 255 PPPLMGMAQSGYQGQYPPVPPPPPSVT-----PMPPP----MPPTPGMTPRPPPPPSSGM 305
Query: 709 XKGPXTXXXXXXXXXXXXXXXPPXXPXKKFXPQXQRGAXPPXXFKKSXGV-XPLXXPPXA 885
P PP P +F P G PP G+ P PP
Sbjct: 306 WPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPP----PPPGMRYPGGMPPPP 361
Query: 886 PPXFP 900
PP +P
Sbjct: 362 PPRYP 366
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,389,696
Number of Sequences: 27780
Number of extensions: 224359
Number of successful extensions: 1145
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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