Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_I02
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   2.2  
02_03_0275 + 17185335-17185895,17186460-17186516,17187360-171884...    29   5.0  
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075...    28   8.7  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -1

Query: 653 QEGASRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 522
           Q   SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 21  QRVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>02_03_0275 +
           17185335-17185895,17186460-17186516,17187360-17188454,
           17188527-17188607
          Length = 597

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 626 GVSPWKLPPALRSPXSDPXRLPDTCPP 706
           G+ P  LPP  RS  + P R P + PP
Sbjct: 39  GLYPLPLPPGWRSAPTSPLRTPSSPPP 65


>04_04_0491 -
           25605560-25605684,25605826-25605928,25606026-25607592,
           25608694-25610198
          Length = 1099

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 163 FSLHSSCGLSKLINVSYHVWIQLTLNKGRSAAAVLFNNLNLKDSL*CXSVME 8
           ++++  CG+S+L N+     I+ T + G    A L N  NL+  L C S +E
Sbjct: 697 WNVYMPCGISELTNLQTMHTIKFTSDSGSCGIADLVNLDNLRGEL-CISGIE 747


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,050,920
Number of Sequences: 37544
Number of extensions: 405180
Number of successful extensions: 1064
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)