Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_I01
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.64 
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.5  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   4.5  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   6.0  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   6.0  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -2

Query: 675  SAVLPKLQSXLKDQHEPHFPWSLMSVTAPCFLQSTCSGSFTLAGDMNLAPRTLPP 511
            S  L KL S L++QHE  F      +T   FL+ T      L   +NL    L P
Sbjct: 1708 SGKLKKLHSQLEEQHETFFRAEQQRMTQLGFLKETVKKQEKLLKKLNLRQEQLIP 1762


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 621 FPWSLMSVTAPCFLQSTCSGSFTLAGDMN 535
           +PWS   V    +L     G F LAGD N
Sbjct: 399 YPWSQPVVNITDYLSDNGDGHFVLAGDGN 427


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +1

Query: 694 WLSLSEQ--NLIDCSEQYGNNGCNGGLMDNAFKYIKDNGGIDTEQTYPYEG 840
           + SL EQ  NL+    QY     NG +      Y   N   +T + YPY G
Sbjct: 26  YASLQEQDENLLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTG 76


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/73 (17%), Positives = 34/73 (46%)
 Frame = +1

Query: 280 KLQHRLNYESEVEDNFRMKIYAEHKHIIAKHNQKYEMGLXFLQAGHEQVRRHAPPRVRED 459
           K QH +     + D F  K+  +  ++ A  N+ Y+  + +L+   E +   +   + + 
Sbjct: 245 KYQHPVRSLLNLIDKFIDKLSEQSGNVTADTNEHYDRAMQYLKQLVENILNRSLDNLIDT 304

Query: 460 YERLQQNCQTQQE 498
            +++Q + +  +E
Sbjct: 305 LKQVQHDAENDEE 317


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -2

Query: 687 RTDGSAVLPKLQSXLKDQHEPHFPWSLMSVTAPCFLQST--CSGSF 556
           + D S  L K      D  EP+F   L  +T  C L +   CSG+F
Sbjct: 744 KCDTSKSLAKSLDECVDPKEPYFNTLLRILTTRCMLSAEYFCSGTF 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,433
Number of Sequences: 5004
Number of extensions: 61015
Number of successful extensions: 209
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)