Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H24
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    29   0.87 
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   2.0  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    27   3.5  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   4.7  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    27   4.7  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    26   8.1  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    26   8.1  

>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 692 KPRIF*GSAQRR*PPISI--SGILIRPRCPTPGRWRELRLKISGGSADGSGRRTQLLIPS 519
           KP +F GS+QRR    +I  S I +      PG   EL  K  G  +    R +QL  PS
Sbjct: 452 KPHVFSGSSQRRATGKNIHESAIALFSLHDVPGLMEELIYKSRGRGSPKGFRGSQLKYPS 511

Query: 518 N 516
           +
Sbjct: 512 S 512


>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
 Frame = -2

Query: 534 AVNPVKRFIVKSLGLSATFGPVFLIINGNS-------GMMYISCT 421
           A+  +K+F + SLGL+    PV L+++           M++++CT
Sbjct: 33  AIGNIKKFSIGSLGLTYMISPVMLLLDAGGLSLGTRMSMVFLACT 77


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 230 LSGSVVC*THQINIFNCLHYNRTRLLSRHASRR-SVQCASQLFTF 99
           +S S+VC    + IF CL YN   +   H  +R S  CAS    F
Sbjct: 113 ISISIVC-IFDLVIFGCLQYNMVSMDDLHVMQRLSWFCASLALLF 156


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 523  GINSCVRLPEPSALPPDIFKRSS 591
            G  SCV + +P+ LPP +  ++S
Sbjct: 1533 GCESCVMVGDPNQLPPTVLSKTS 1555


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 389 IVASNRRPWPIL*QHFLFPSGNQRI 315
           +V ++ RP P+  QH+LFPSG+  I
Sbjct: 365 VVYTDFRPTPL--QHYLFPSGSDGI 387


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 555 RFWKANAAVNPVKRFIVKSLGLSATFGPVFL 463
           RF +  +  NP   F V SLGL + F  +FL
Sbjct: 102 RFIEPPSVSNPTLMFFVGSLGLLSNFVGIFL 132


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 209 NRLQSRTKMETFKFSNDKKHVTEAVFNGSVFYEVYKY 319
           N++++   M T  F+ND++ +     N SV Y+ Y Y
Sbjct: 74  NKIKNLFTMFTCCFANDEEEIWGEETNESVVYKEYTY 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,647,122
Number of Sequences: 5004
Number of extensions: 77827
Number of successful extensions: 236
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)