Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H24
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0372 + 33446153-33446665,33446744-33446993,33447347-334475...    29   3.7  
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372...    29   3.7  
03_06_0373 + 33468711-33468917,33469020-33469217                       29   4.9  
03_06_0370 + 33431696-33432217,33432521-33432796,33433003-334331...    29   4.9  
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595...    29   6.5  
03_01_0329 + 2558726-2559112,2559214-2559449,2559537-2559663,256...    28   8.6  
02_05_1067 - 33858215-33858321,33858422-33858527,33859014-338592...    28   8.6  

>03_06_0372 +
           33446153-33446665,33446744-33446993,33447347-33447501,
           33447593-33447805,33447926-33448113,33448282-33448540
          Length = 525

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 481 RGAQAKRFHNKSFDGINSCVRLPEPSALPPDIFKRS 588
           +G     +H   FDG  SC  +P+  AL P + K S
Sbjct: 141 KGCLQCAYHGWCFDGHGSCQFIPQAPALGPPVHKNS 176


>03_06_0371 +
           33435936-33436472,33436554-33436741,33437146-33437245,
           33437360-33437545,33438977-33439186,33439772-33439959,
           33440083-33440341
          Length = 555

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +1

Query: 367 GLRFEATIEGSQAGAVHQSTRYVHHSRVAVND*KNRAE-RGAQAKRFHNKSFDGINSCVR 543
           GLR  A  +G   G          H    +++   R + +G     +H   FDG  SC  
Sbjct: 112 GLRVVAWFDGGGGGEWRVVDDACPHRLAPLSE--GRVDGKGRLQCAYHGWCFDGHGSCQF 169

Query: 544 LPEPSALPPDIFKRS 588
           +P+  AL P + K S
Sbjct: 170 IPQAPALGPPVHKNS 184


>03_06_0373 + 33468711-33468917,33469020-33469217
          Length = 134

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 502 FHNKSFDGINSCVRLPEPSALPPDIFKRS 588
           +H   FDG  SC  +P+  AL P + K S
Sbjct: 46  YHGWCFDGHGSCQFIPQAPALGPPVHKNS 74


>03_06_0370 +
           33431696-33432217,33432521-33432796,33433003-33433183,
           33433253-33433455,33433545-33433732,33433844-33434105
          Length = 543

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 502 FHNKSFDGINSCVRLPEPSALPPDIFKRS 588
           +H   FDG  SC  +P+  AL P + K S
Sbjct: 151 YHGWCFDGHGSCQFIPQAPALGPPVHKNS 179


>10_06_0102 + 10758601-10758948,10759051-10759257,10759349-10759507,
            10759617-10759709,10759913-10760008,10760457-10760724,
            10760805-10761047,10761298-10761422,10761499-10761615,
            10761705-10761779,10761886-10761942,10762035-10762139,
            10762244-10762330,10762790-10763047,10763075-10763263,
            10763418-10763528,10763640-10763729,10763814-10763990,
            10764075-10764152,10764412-10764726,10764819-10765162,
            10765304-10765541,10765631-10765998,10766106-10766316,
            10766622-10766801,10766886-10769045,10769151-10769207
          Length = 2251

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 187  LIVFTITGHVC*VDM-RVVEVCNVHHNYSHFTILLSXSFHPFLFD 56
            ++V  +TGH C VD+ R VE  N H  + H         H  + D
Sbjct: 1440 VVVTNVTGHTCTVDIYREVEDSNTHKLFYHSVTPSLGPLHGIVLD 1484


>03_01_0329 +
           2558726-2559112,2559214-2559449,2559537-2559663,
           2560190-2560326,2560467-2560626,2560828-2561106,
           2561750-2561920,2562636-2562717,2563397-2563623,
           2563682-2563727,2564199-2564281,2564376-2564492,
           2564965-2565036
          Length = 707

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 478 ERGAQAKRFHNKSFDGINSCVRLPEPSALPPD 573
           E G     +H  SFDG  +C R+P+ +   P+
Sbjct: 135 ETGCLQCSYHGWSFDGSGACTRIPQAAPEGPE 166


>02_05_1067 -
           33858215-33858321,33858422-33858527,33859014-33859218,
           33859463-33859650,33859780-33859957,33860201-33860298,
           33860619-33860873,33861002-33861236,33861846-33861973
          Length = 499

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +1

Query: 625 IKMPLILIGGQRR*ALP*NIRGLPLVCALKKYQMKKLPLELVIKAGKIKNEK 780
           ++ PL+L  G++R  +P  ++   LVC   K  +K  PL L++   +++ EK
Sbjct: 274 LQHPLLLNSGKKRYRIPTKLQSYKLVC---KSNLK--PLSLIVLLQELRGEK 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,217,711
Number of Sequences: 37544
Number of extensions: 499146
Number of successful extensions: 1246
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)