Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H24
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-3|CAA86317.1|  556|Caenorhabditis elegans Hypothetical pr...    32   0.47 
L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z81556-7|CAB04519.1|  569|Caenorhabditis elegans Hypothetical pr...    29   3.3  

>Z46241-3|CAA86317.1|  556|Caenorhabditis elegans Hypothetical
           protein C38D4.4 protein.
          Length = 556

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 481 RGAQAKRFHNKSFDGINSCVRLPEPSALPPDIFKRSSRHRP-GVGQRGRIKMP 636
           R A +  FHNKS  G  + +R P+PS + P    R++  +P   G R  ++ P
Sbjct: 109 RAATSMGFHNKSGFGYAAHLRSPKPSFMYPASSARANPAKPQATGYRNTVRHP 161


>L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical
           protein C14B9.2 protein.
          Length = 618

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 407 GQCIKVQDMYIIPELPLMIKKTGPNVALKPSDFTIN 514
           G C   +  Y+  EL   +KKT PNV L   D TIN
Sbjct: 530 GHCKSFESKYV--ELAQALKKTQPNVVLAKMDATIN 563


>Z81556-7|CAB04519.1|  569|Caenorhabditis elegans Hypothetical
           protein F58G1.7 protein.
          Length = 569

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 421 FDALPRLDFLQSLPQIVGLGQYYSNIFFFLQEISVFVNFI-EH*PVKYSFGDVF 263
           +  +P +  L+      G+ Q + +IF FL   ++F+NF+ EH     SFG  F
Sbjct: 252 YSPMPTMHKLRLTLTFYGVFQLFISIFIFL-SATIFLNFLREHCKFAMSFGSFF 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,382,485
Number of Sequences: 27780
Number of extensions: 446782
Number of successful extensions: 1144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)