Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H23
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    42   2e-04
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    29   0.67 
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    27   4.8  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
 Frame = +2

Query: 464  LKGVILLIFEKALDEPKYSSMYAQLCKRLSEEA-----------PNFEPPGQPCTFKLLL 610
            LK VI L FEKA DEP +S+MYA+  +++ +              N +P      F+  L
Sbjct: 1047 LKQVIQLTFEKATDEPNFSNMYARFARKMMDSIDDSIRDEGVLDKNNQPVRGGLLFRKYL 1106

Query: 611  LNKCRTEFENRTQA 652
            L++C+ +FE   +A
Sbjct: 1107 LSRCQEDFERGWKA 1120



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +1

Query: 355  DIIFRKVRGILNKLTPEKFQK 417
            +++ RKV+G LNK+T EKF K
Sbjct: 1006 EVVQRKVKGSLNKMTLEKFDK 1026


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 574 LEVGSLFAEPLAELCVHRRVLRLVQGFLKNEKDDALEXPCRSPI 443
           L+ GS F E   E+CV +   +L Q  L  E++      C S I
Sbjct: 654 LQFGSTFYEKAIEICVDQHACQLCQRSLDKEEEKLFVEHCHSMI 697


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 425 MISSGSNWTPTGXLKGVILLIFEKALDEPKYSSMYAQLCKRLSEEAPNFE 574
           +I    N T      G I L F  ALD+     M++ LC++L E + NFE
Sbjct: 267 IIQKFDNKTNFTVANGEIFLTFN-ALDDVS-PEMHSDLCQQLIEASKNFE 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,225
Number of Sequences: 5004
Number of extensions: 37138
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)